Photorhabdus and Xenorhabdus Mass2Motifs

Description: Mass2Motifs discovered in Molecular Networking clustered positive ionisation mode mass spectra generated from bacterial extracts of nematode symbionts of the Photorhabdus and Xenorhabdus genera.


      Analysis_MassSpectrometer: Time-Of-Flight (ToF)
      Motif_Name_Prefix: rhabdus
      Collision_Energy: HCD
      Other_Information: The Mass2Motif set contains mainly peptidic Mass2Motifs which is in line with previous work done on Photorhabdus and Xenorhabdus extracts and the findings in the paper of Tobias et al.
      Scientific_Name: Photorhabdus genus, Xenorhabdus genus
      Sample_Type: bacterial extractsi
      Featureset_Name: binned_005
      Massive_ID: MSV000081063
      Taxon_ID: 29487, 626
      MS2LDA_Experiment_ID: 570
      Analysis_ChromatographyAndPhase: reverse phase (C18)
      Analysis_Polarity: positive ionisation mode
      Featureset_Id: 1
      Analysis_IonizationSource: electospray ionization
Motif Annotation
rhabdus_motif_289.m2m Interesting motif!! 251/223/178 mass fragments Resolver: mzspec:MOTIFDB::accession:177257
rhabdus_motif_272.m2m Interesting motif - peptidic nature Resolver: mzspec:MOTIFDB::accession:177258
rhabdus_motif_95.m2m Xenortide related Mass2Motif Resolver: mzspec:MOTIFDB::accession:177259
rhabdus_motif_91.m2m Phenylpropanoid related Mass2Motif Resolver: mzspec:MOTIFDB::accession:177260
rhabdus_motif_90.m2m Xenoamicin related Mass2Motif - peptidic tail Resolver: mzspec:MOTIFDB::accession:177261
rhabdus_motif_221.m2m small peptidic substructure Resolver: mzspec:MOTIFDB::accession:177262
rhabdus_motif_140.m2m Microcin related Mass2Motif II Resolver: mzspec:MOTIFDB::accession:177263
rhabdus_motif_145.m2m interesting motif - small substructure [205, 177] Resolver: mzspec:MOTIFDB::accession:177264
rhabdus_motif_40.m2m Xenoamicin related Mass2Motif - peptidic ring Resolver: mzspec:MOTIFDB::accession:177265
rhabdus_motif_42.m2m Interesting motif - peptidic nature - cyclic fragments 472, 473 and 376 (Xentrivalpeptides and others) Resolver: mzspec:MOTIFDB::accession:177266
rhabdus_motif_285.m2m Peptidic loss of 113 - related to presence of Leucine or Methylvaline [in Rhabdopeptides or related peptides] Resolver: mzspec:MOTIFDB::accession:177267
rhabdus_motif_281.m2m Peptidic motif - theonellapeptolide related? Resolver: mzspec:MOTIFDB::accession:177268
rhabdus_motif_134.m2m Cyclic peptide related Mass2Motif - Proline-Glutamine-Tyrosine-Valine like motif Resolver: mzspec:MOTIFDB::accession:177269
rhabdus_motif_209.m2m Ethylphenyl related mass fragment (m/z 105) - present in phenylethylamides, dialkylresorcinols, and cyclohexanedions Resolver: mzspec:MOTIFDB::accession:177270
rhabdus_motif_287.m2m Xenobovid related Mass2Motif Resolver: mzspec:MOTIFDB::accession:177271
rhabdus_motif_298.m2m Amino group loss - indicative for presence of free NH2 (amino) group Resolver: mzspec:MOTIFDB::accession:177272
rhabdus_motif_58.m2m interesting motif - peptidic nature - 8 core fragments between 144 and 232 Resolver: mzspec:MOTIFDB::accession:177273
rhabdus_motif_278.m2m Fatty acid C10:0 3-OH related Mass2Motif [fragment 154] Resolver: mzspec:MOTIFDB::accession:177274
rhabdus_motif_53.m2m Interesting motif - small substructure Resolver: mzspec:MOTIFDB::accession:177275
rhabdus_motif_51.m2m small peptidic substructure (m/z 105, 230, 123) Resolver: mzspec:MOTIFDB::accession:177276
rhabdus_motif_50.m2m small substructure - 114 and 97 (and 139) Resolver: mzspec:MOTIFDB::accession:177277
rhabdus_motif_8.m2m Peptidic motif - theonellapeptolide related? Resolver: mzspec:MOTIFDB::accession:177278
rhabdus_motif_122.m2m Interesting motif - substructure/scaffold Resolver: mzspec:MOTIFDB::accession:177279
rhabdus_motif_120.m2m Water loss and water + amino group loss related Mass2Motif Resolver: mzspec:MOTIFDB::accession:177280
rhabdus_motif_210.m2m Cyclic peptide related Mass2Motif - Sarcosine-MeLeucine-Valine-MeLeucine-alpha-Aminobutyric acid - part of Cyclosporine Resolver: mzspec:MOTIFDB::accession:177281
rhabdus_motif_187.m2m Interesting motif - cyclic peptide related Resolver: mzspec:MOTIFDB::accession:177282
rhabdus_motif_64.m2m Microcin related Mass2Motif Resolver: mzspec:MOTIFDB::accession:177283
rhabdus_motif_63.m2m Interesting motif - peptidic nature Resolver: mzspec:MOTIFDB::accession:177284
rhabdus_motif_116.m2m Interesting motif - small substructure [142, 114 and 196] Resolver: mzspec:MOTIFDB::accession:177285
rhabdus_motif_115.m2m Interesting motif - small substructure [141, 112 and 98] Resolver: mzspec:MOTIFDB::accession:177286
rhabdus_motif_118.m2m interesting motif - peptidic nature - cyclic fragments 473, 474, 342 and 376 Resolver: mzspec:MOTIFDB::accession:177287
rhabdus_motif_295.m2m Small peptidic substructure Resolver: mzspec:MOTIFDB::accession:177288
rhabdus_motif_265.m2m Interesting motif - peptidic nature Resolver: mzspec:MOTIFDB::accession:177289
rhabdus_motif_151.m2m Xenocoumacin related Mass2Motif - with m/z 250 ( 3,4-dihydro-8-hydroxy-1H-2-benzopyran-1-one related) and m/z 158 (remaining fragment that includes pyrrolidine) mass fragments Resolver: mzspec:MOTIFDB::accession:177290
rhabdus_motif_286.m2m 3-alkyl-indole and indole related motif (146, 130, 117 mass fragments) Resolver: mzspec:MOTIFDB::accession:177291
rhabdus_motif_72.m2m Lysine and Lysine-Lysine peptidic Mass2Motif Resolver: mzspec:MOTIFDB::accession:177292
rhabdus_motif_77.m2m Taxillaid related Mass2Motif Resolver: mzspec:MOTIFDB::accession:177293
rhabdus_motif_106.m2m interesting motif - peptidic nature - small fragments 213 and 185 Resolver: mzspec:MOTIFDB::accession:177294
rhabdus_motif_186.m2m Pyrrolizidine related Mass2Motif Resolver: mzspec:MOTIFDB::accession:177295
rhabdus_motif_249.m2m Interesting motif - peptidic nature - small fragments with 177 and 133 most abundant Resolver: mzspec:MOTIFDB::accession:177296
rhabdus_motif_245.m2m Taxillaid related Mass2Motif Resolver: mzspec:MOTIFDB::accession:177297
rhabdus_motif_15.m2m Xefoampeptide related Mass2Motif - specific losses including C=O loss (28) and Leucine + C=Om (141) Resolver: mzspec:MOTIFDB::accession:177298
rhabdus_motif_250.m2m Xenortide-derived peptidic Mass2Motif Resolver: mzspec:MOTIFDB::accession:177299
rhabdus_motif_162.m2m Szentiamide related Mass2Motif Resolver: mzspec:MOTIFDB::accession:177300
rhabdus_motif_163.m2m Leucine-Leucine peptidic fragment Mass2Motif (i.e., in Xenobovid peptides) Resolver: mzspec:MOTIFDB::accession:177301
rhabdus_motif_84.m2m Rhabdopeptide related Mass2Motif [MeLeu – MeVal – Val – MeVal -- 453 - 340 - 227], [also includes MeVal – MeLeu – MeVal – MeVal motif -- 468 - 354 - 241] Resolver: mzspec:MOTIFDB::accession:177302