Mass2Motif: motif_3

Return to experiment GlobalEuphorbiaStudy

Mass2Motif Annotation

The following are the full annotation and the short annotation (used for network visualisation) assigned to this Mass2Motif.

Annotation: Loss of hexadienoic acid

Short Annotation: Loss of hexadienoic acid and its fragment / difference of 18 corresponds to the loss of-NH3 adduct

Mass2Motif Details

The following table shows the fragment and loss features that are explained by this Mass2Motifs and their corresponding probabilities. After thresholding to save the model, the total probability left in this motif is 0.8620625579876944. The column MAGMa Substructure Annotation shows substructures and the counts of MAGMa annotations for documents linked above threshold to this motif in this experiment. Hovering over each MAGMa substructure shows a plot of the substructure.

Feature Probability MAGMA Substructure Annotation
loss_112.0575 0.128
loss_130.0675 0.034
fragment_147.1125 0.021
fragment_523.4075 0.016
fragment_173.1275 0.015
fragment_161.1275 0.014
fragment_535.4075 0.014
fragment_109.0975 0.014
loss_111.0575 0.013
loss_140.0475 0.013
fragment_121.0975 0.013
fragment_95.0825 0.012
fragment_533.3925 0.012
fragment_189.1225 0.012
fragment_123.1125 0.011
fragment_403.3275 0.010
fragment_145.0975 0.010
fragment_159.1125 0.009
fragment_297.2175 0.009
fragment_191.1425 0.009
fragment_163.1425 0.009
loss_140.0525 0.009
fragment_175.1475 0.008
fragment_337.2475 0.008
fragment_171.1125 0.008
fragment_279.2075 0.008
fragment_107.0825 0.008
fragment_95.0475 0.008
fragment_149.1325 0.007
fragment_119.0825 0.007
fragment_383.3625 0.007
fragment_135.1125 0.007
fragment_219.2075 0.006
fragment_205.1925 0.006
fragment_403.3325 0.006
fragment_207.2075 0.006
fragment_133.0975 0.006
fragment_328.2475 0.005
fragment_422.3425 0.005
loss_162.1425 0.005
fragment_412.3575 0.005
fragment_175.1425 0.005
fragment_149.1275 0.005
fragment_325.2475 0.005
loss_129.0625 0.005
fragment_559.4075 0.005
fragment_257.2225 0.004
fragment_393.3475 0.004
fragment_157.0975 0.004
loss_84.0975 0.004
fragment_187.1425 0.004
fragment_524.4125 0.004
fragment_199.1425 0.004
fragment_97.0975 0.004
fragment_83.0825 0.004
fragment_307.2375 0.004
fragment_281.2225 0.004
loss_196.1525 0.004
fragment_185.1275 0.004
fragment_81.0675 0.004
fragment_395.3575 0.004
fragment_295.2025 0.004
fragment_191.1375 0.003
fragment_534.3925 0.003
fragment_213.1625 0.003
fragment_203.1375 0.003
fragment_137.1275 0.003
fragment_93.0675 0.003
fragment_151.1475 0.003
fragment_231.2075 0.003
fragment_111.1125 0.003
fragment_319.2375 0.003
fragment_159.1175 0.003
fragment_189.1575 0.003
fragment_536.4075 0.003
fragment_277.1875 0.003
fragment_201.1625 0.003
fragment_404.3325 0.003
loss_17.0375 0.003
fragment_105.0675 0.003
fragment_455.3375 0.003
fragment_177.1575 0.003
fragment_327.2425 0.003
fragment_137.1325 0.003
fragment_215.1775 0.003
fragment_243.2075 0.003
loss_163.1475 0.003
fragment_137.0925 0.003
fragment_205.1575 0.003
fragment_217.1575 0.003
fragment_269.2225 0.003
loss_129.0575 0.002
fragment_283.2375 0.002
fragment_297.2525 0.002
loss_35.0475 0.002
fragment_351.2625 0.002
fragment_187.1475 0.002
fragment_233.2225 0.002
fragment_225.1625 0.002
fragment_135.0775 0.002
fragment_155.1025 0.002
fragment_449.2975 0.002
fragment_189.1625 0.002
loss_139.0475 0.002
fragment_241.1925 0.002
loss_84.1025 0.002
fragment_163.1075 0.002
fragment_199.1475 0.002
fragment_215.1375 0.002
fragment_309.2525 0.002
fragment_229.1925 0.002
fragment_193.1925 0.002
fragment_323.2325 0.002
fragment_217.1525 0.002
fragment_251.1725 0.002
fragment_215.1725 0.002
fragment_229.1525 0.002
fragment_151.1425 0.002
fragment_185.1325 0.002
fragment_131.0825 0.002
fragment_163.1475 0.002
loss_193.1375 0.002
fragment_217.1875 0.002
fragment_297.2475 0.002
fragment_490.4075 0.002
fragment_169.0975 0.002
fragment_183.1125 0.002
fragment_393.3425 0.002
fragment_227.1725 0.002
fragment_295.2375 0.002
loss_124.1275 0.002
fragment_201.1575 0.002
fragment_211.1425 0.002
fragment_179.1775 0.002
fragment_177.1225 0.002
fragment_135.1175 0.002
fragment_239.1775 0.002
fragment_265.1925 0.002
fragment_175.1075 0.001
fragment_253.1925 0.001
fragment_299.2325 0.001
fragment_177.1625 0.001
fragment_235.2375 0.001
loss_98.1125 0.001
fragment_271.2375 0.001
loss_139.0525 0.001
loss_152.1625 0.001
fragment_299.2675 0.001
fragment_327.2625 0.001
loss_96.1025 0.001
fragment_255.1675 0.001
loss_111.9925 0.001
loss_96.0275 0.001
fragment_285.2525 0.001
fragment_187.1075 0.001
fragment_191.1775 0.001
fragment_451.3125 0.001
loss_124.1325 0.001
fragment_161.0925 0.001
fragment_259.2425 0.001
fragment_333.2525 0.001
fragment_411.4225 0.001
fragment_239.1725 0.001
fragment_241.1525 0.001
fragment_313.2475 0.001
fragment_113.0575 0.001
fragment_315.2575 0.001
fragment_384.3675 0.001
loss_196.1475 0.001
fragment_560.4075 0.001
fragment_125.1275 0.001
fragment_269.1925 0.001
fragment_259.2375 0.001
fragment_143.0825 0.001
fragment_247.2375 0.001
fragment_157.1025 0.001
loss_156.0875 0.001
fragment_125.1325 0.001
fragment_319.2325 0.001
fragment_339.2625 0.001
fragment_197.1275 0.001
fragment_217.1925 0.001
fragment_223.1425 0.001
fragment_311.2675 0.001
fragment_176.1475 0.001
fragment_333.2675 0.001
fragment_245.2225 0.001
loss_182.1375 0.001
loss_191.1225 0.001
fragment_237.1575 0.001
fragment_396.3625 0.001
fragment_404.3375 0.001
fragment_316.2675 0.001

Counts of Mass2Motif Features

Two bar plots will appear below this message. The first shows the proportion of the total intensity of these features explained by this Mass2Motif. Red bars show the total intensity (across the whole dataset), blue bars show the proportion explained by the selected Mass2Motif. The second shows the number of times each feature in this Mass2Motif appears in the documents associated with this Mass2Motif.

Fragmentation Spectra Explained by Mass2Motif

The following table lists all fragmentation spectra that are explained by this Mass2Motif at the threshold specified in the experiment option.

Fragmentation spectra Precursor Mass Parent mass Annotation Probability Overlap Score
document_2610 533.3976 533.3976 None 0.866 0.639
document_2633 535.4125 535.4125 None 0.792 0.569
document_1986 490.3888 490.3888 None 0.792 0.296
document_2480 523.4120 523.4120 None 0.679 0.483
document_2947 559.4129 559.4129 None 0.652 0.386
document_2816 549.4351 549.4351 None 0.353 0.291
document_1822 481.3658 481.3658 None 0.302 0.322
document_2612 533.4003 533.4003 None 0.261 0.373
document_2409 519.4227 519.4227 None 0.207 0.262
document_132 315.1949 315.1949 None 0.128 0.052
document_2807 549.3944 549.3944 None 0.126 0.310
document_2668 537.4314 537.4314 None 0.124 0.218
document_3214 581.3813 581.3813 None 0.112 0.249
document_4083 649.5534 649.5534 None 0.111 0.051
document_2407 519.4185 519.4185 None 0.111 0.248
document_2667 537.4311 537.4311 None 0.108 0.211
document_1057 439.3555 439.3555 None 0.098 0.264
document_2608 533.3943 533.3943 None 0.079 0.340
document_3253 584.4304 584.4304 None 0.075 0.192
document_1825 481.3666 481.3666 None 0.075 0.141
document_136 317.2078 317.2078 None 0.071 0.015
document_2811 549.4268 549.4268 None 0.071 0.171
document_160 329.1735 329.1735 None 0.070 0.001
document_2596 532.3979 532.3979 None 0.057 0.109
document_2809 549.3987 549.3987 None 0.057 0.234
document_2666 537.4256 537.4256 None 0.055 0.173

Fragmentation Spectra Plot

The fragmentation spectra of molecules explained by this Mass2Motif are plotted below. Features (fragments and losses) explained by this Mass2Motif will be coloured red, while parent ion is coloured in blue. Click Next and Previous to cycle through the fragmentation spectra.