Mass2Motif: motif_299

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Mass2Motif Annotation

The following are the full annotation and the short annotation (used for network visualisation) assigned to this Mass2Motif.

Annotation: Loss of phenylgroup 77 and other fragments 95, 135, 105

Short Annotation: Loss of phenylgroup 77 and other fragments

Mass2Motif Details

The following table shows the fragment and loss features that are explained by this Mass2Motifs and their corresponding probabilities. After thresholding to save the model, the total probability left in this motif is 0.9818297060594582. The column MAGMa Substructure Annotation shows substructures and the counts of MAGMa annotations for documents linked above threshold to this motif in this experiment. Hovering over each MAGMa substructure shows a plot of the substructure.

Feature Probability MAGMA Substructure Annotation
loss_77.0425 0.744
loss_76.0375 0.067
loss_76.0425 0.048
loss_95.0525 0.028
fragment_367.3325 0.012
loss_78.0525 0.012
loss_135.0825 0.011
fragment_424.3625 0.007
fragment_109.1025 0.005
fragment_193.1925 0.005
fragment_485.3925 0.004
loss_61.0475 0.003
fragment_137.1325 0.003
loss_59.0325 0.003
loss_94.0475 0.003
loss_60.0475 0.002
loss_105.0375 0.002
fragment_467.3825 0.002
loss_60.0125 0.002
loss_94.0525 0.002
fragment_502.4025 0.002
fragment_484.3875 0.002
loss_18.0275 0.001
fragment_137.0975 0.001
fragment_502.4225 0.001
fragment_275.2375 0.001
loss_79.0625 0.001
loss_134.0825 0.001
fragment_368.3375 0.001
fragment_424.3925 0.001
fragment_397.3775 0.001
loss_79.0575 0.001

Counts of Mass2Motif Features

Two bar plots will appear below this message. The first shows the proportion of the total intensity of these features explained by this Mass2Motif. Red bars show the total intensity (across the whole dataset), blue bars show the proportion explained by the selected Mass2Motif. The second shows the number of times each feature in this Mass2Motif appears in the documents associated with this Mass2Motif.

Fragmentation Spectra Explained by Mass2Motif

The following table lists all fragmentation spectra that are explained by this Mass2Motif at the threshold specified in the experiment option.

Fragmentation spectra Precursor Mass Parent mass Annotation Probability Overlap Score
document_2156 502.4178 502.4178 None 0.539 0.919
document_2157 502.4181 502.4181 None 0.386 0.888
document_1901 486.4273 486.4273 None 0.243 0.827
document_2159 502.4225 502.4225 None 0.243 0.819
document_2035 494.2744 494.2744 None 0.183 0.791
document_488 390.2255 390.2255 None 0.151 0.855
document_2819 550.2996 550.2996 None 0.125 0.798
document_2766 546.4468 546.4468 None 0.103 0.831
document_4747 716.3258 716.3258 None 0.100 0.808
document_2425 520.4284 520.4284 None 0.091 0.869
document_2356 516.4007 516.4007 None 0.081 0.827
document_2820 550.3005 550.3005 None 0.077 0.794
document_2158 502.4207 502.4207 None 0.076 0.821
document_3154 576.3146 576.3146 None 0.073 0.803
document_2081 498.2831 498.2831 None 0.073 0.832
document_3928 638.3148 638.3148 None 0.057 0.744
document_2061 496.3966 496.3966 None 0.054 0.799
document_776 416.3686 416.3686 None 0.053 0.812
document_3859 632.3417 632.3417 None 0.052 0.798

Fragmentation Spectra Plot

The fragmentation spectra of molecules explained by this Mass2Motif are plotted below. Features (fragments and losses) explained by this Mass2Motif will be coloured red, while parent ion is coloured in blue. Click Next and Previous to cycle through the fragmentation spectra.