Mass2Motif: motif_15

Return to experiment PhotorhabdusXenorhabdus_LDA_300Mass2Motifs_minMS2Int_25

Mass2Motif Annotation

The following are the full annotation and the short annotation (used for network visualisation) assigned to this Mass2Motif.

Annotation: Xefoampeptide related Mass2Motif - specific losses including C=O loss (28) and Leucine + C=Om (141)

Short Annotation: Xefoampeptide related Mass2Motif

Mass2Motif Details

The following table shows the fragment and loss features that are explained by this Mass2Motifs and their corresponding probabilities. After thresholding to save the model, the total probability left in this motif is 0.8294515711964621. The column MAGMa Substructure Annotation shows substructures and the counts of MAGMa annotations for documents linked above threshold to this motif in this experiment. Hovering over each MAGMa substructure shows a plot of the substructure.

Feature Probability MAGMA Substructure Annotation
loss_27.9925 0.165
loss_141.0775 0.032
loss_26.9925 0.023
fragment_154.1575 0.021
fragment_210.1825 0.018
fragment_238.2175 0.017
fragment_454.3625 0.013
fragment_440.3475 0.013
fragment_245.1875 0.012
fragment_153.1275 0.011
loss_113.0825 0.011
fragment_284.2225 0.010
fragment_256.1925 0.010
fragment_266.2125 0.010
fragment_125.0975 0.009
fragment_238.1775 0.009
fragment_228.1975 0.009
fragment_256.2275 0.009
fragment_496.4125 0.007
fragment_468.3775 0.007
fragment_482.3925 0.007
loss_72.9775 0.007
fragment_133.0525 0.007
fragment_340.3575 0.007
loss_126.6375 0.007
fragment_233.6375 0.007
fragment_231.1675 0.007
fragment_298.2375 0.006
fragment_253.2275 0.006
fragment_575.2825 0.006
fragment_280.2275 0.006
fragment_203.1375 0.006
fragment_327.2625 0.006
fragment_206.0275 0.006
fragment_188.1425 0.006
loss_99.0675 0.005
fragment_267.2425 0.005
fragment_369.2725 0.005
fragment_158.1175 0.005
fragment_299.2325 0.005
loss_55.9925 0.005
fragment_200.1625 0.005
loss_197.1425 0.005
fragment_178.0325 0.005
fragment_167.1425 0.005
fragment_341.2775 0.005
fragment_313.2475 0.005
fragment_270.2425 0.005
fragment_412.3175 0.005
fragment_286.2175 0.004
fragment_332.2225 0.004
loss_143.0675 0.004
fragment_745.4075 0.004
fragment_411.3225 0.004
fragment_437.2025 0.004
fragment_530.3975 0.004
fragment_150.0375 0.004
fragment_140.1425 0.003
fragment_252.2325 0.003
fragment_186.1475 0.003
fragment_325.2725 0.003
loss_140.0775 0.003
loss_25.9875 0.003
fragment_441.3525 0.003
fragment_455.3675 0.003
fragment_295.2375 0.003
fragment_397.3025 0.003
fragment_304.2275 0.003
fragment_281.2225 0.003
loss_184.1175 0.003
fragment_154.1525 0.003
fragment_225.1975 0.003
fragment_576.2975 0.003
fragment_369.3125 0.003
fragment_383.3275 0.003
fragment_744.9025 0.003
fragment_301.2275 0.003
fragment_267.2375 0.003
fragment_314.2125 0.003
loss_71.9675 0.002
fragment_134.0575 0.002
fragment_355.2975 0.002
fragment_445.3075 0.002
fragment_211.1875 0.002
fragment_271.2025 0.002
fragment_239.2175 0.002
fragment_105.0625 0.002
fragment_199.1775 0.002
loss_100.9625 0.002
fragment_360.2675 0.002
loss_60.9775 0.002
fragment_132.1025 0.002
fragment_145.0525 0.002
fragment_355.2575 0.002
fragment_149.1325 0.002
fragment_116.0475 0.002
loss_187.1225 0.002
fragment_409.2325 0.002
fragment_497.4125 0.002
loss_143.1425 0.002
loss_112.0775 0.002
fragment_271.2075 0.002
fragment_577.3025 0.002
fragment_253.1925 0.002
fragment_314.1575 0.002
loss_71.0375 0.002
fragment_550.2875 0.002
fragment_329.2225 0.002
fragment_246.1875 0.002
fragment_170.1525 0.002
loss_140.0725 0.002
loss_184.1225 0.002
fragment_483.3975 0.002
fragment_467.2025 0.002
loss_126.1325 0.002
fragment_234.1375 0.002
fragment_397.3075 0.002
fragment_469.3825 0.002
fragment_347.2325 0.002
fragment_383.2925 0.002
fragment_577.7925 0.002
fragment_230.1375 0.002
fragment_417.3125 0.002
loss_89.9775 0.002
fragment_185.1575 0.002
fragment_745.9025 0.002
loss_169.1125 0.002
fragment_253.2075 0.002
fragment_550.8125 0.002
loss_198.3425 0.002
fragment_624.8775 0.002
loss_169.1075 0.001
loss_115.6275 0.001
loss_141.8175 0.001
fragment_607.3325 0.001
fragment_531.3975 0.001
fragment_939.5375 0.001
fragment_341.3575 0.001
fragment_271.1925 0.001
loss_169.1175 0.001
fragment_746.4075 0.001
fragment_285.2275 0.001
loss_83.0525 0.001
loss_197.8475 0.001
fragment_551.3075 0.001
fragment_257.1925 0.001
fragment_524.4075 0.001
fragment_146.0575 0.001
fragment_112.1125 0.001
fragment_492.2575 0.001
loss_85.4425 0.001
fragment_750.4175 0.001
fragment_482.3575 0.001
fragment_409.2375 0.001
fragment_225.1925 0.001
fragment_749.4125 0.001
loss_85.1075 0.001
fragment_492.5875 0.001
fragment_510.3925 0.001
loss_116.1075 0.001
loss_198.8675 0.001
fragment_97.0975 0.001
fragment_413.3175 0.001
fragment_234.1475 0.001
loss_59.9675 0.001
fragment_748.4175 0.001
fragment_742.4275 0.001
fragment_574.3125 0.001
fragment_287.2175 0.001
loss_124.2725 0.001
fragment_578.3075 0.001
fragment_155.1625 0.001

Counts of Mass2Motif Features

Two bar plots will appear below this message. The first shows the proportion of the total intensity of these features explained by this Mass2Motif. Red bars show the total intensity (across the whole dataset), blue bars show the proportion explained by the selected Mass2Motif. The second shows the number of times each feature in this Mass2Motif appears in the documents associated with this Mass2Motif.

Fragmentation Spectra Explained by Mass2Motif

The following table lists all fragmentation spectra that are explained by this Mass2Motif at the threshold specified in the experiment option.

Fragmentation spectra Precursor Mass Parent mass Annotation Probability Overlap Score
document_3504 468.3420 468.3420 None 0.996 0.396
document_3505 468.3420 468.3420 None 0.978 0.389
document_3717 496.3730 496.3730 None 0.972 0.383
document_3613 482.3580 482.3580 None 0.962 0.404
document_3612 482.3580 482.3580 None 0.957 0.410
document_3801 510.3890 510.3890 None 0.949 0.441
document_184 206.0260 206.0260 None 0.942 0.217
document_2028 340.3560 340.3560 None 0.914 0.008
document_4362 577.6960 577.6960 None 0.882 0.021
document_3918 524.4040 524.4040 None 0.874 0.340
document_4207 558.3890 558.3890 None 0.832 0.323
document_3227 440.3110 440.3110 None 0.819 0.353
document_2335 360.2740 360.2740 None 0.756 0.024
document_5453 749.1530 749.1530 None 0.716 0.036
document_5436 744.9110 744.9110 None 0.492 0.018
document_4070 544.3730 544.3730 None 0.302 0.298
document_1886 329.2220 329.2220 None 0.175 0.232
document_237 214.0960 214.0960 None 0.175 0.191
document_1732 317.1470 317.1470 None 0.139 0.220
document_55 179.0800 179.0800 None 0.120 0.170
document_16 146.0580 146.0580 None 0.114 0.189
document_3411 458.2500 458.2500 None 0.113 0.191
document_669 253.0080 253.0080 None 0.094 0.189
document_815 263.0810 263.0810 None 0.093 0.195
document_316 223.0490 223.0490 None 0.075 0.165
document_1709 315.2060 315.2060 None 0.071 0.230
document_2159 347.3040 347.3040 None 0.062 0.165
document_46 172.9820 172.9820 None 0.052 0.166
document_65 183.0790 183.0790 None 0.052 0.165
document_4425 586.3950 586.3950 None 0.052 0.288
document_4516 600.4100 600.4100 None 0.051 0.257
document_3413 458.2510 458.2510 None 0.050 0.187

Fragmentation Spectra Plot

The fragmentation spectra of molecules explained by this Mass2Motif are plotted below. Features (fragments and losses) explained by this Mass2Motif will be coloured red, while parent ion is coloured in blue. Click Next and Previous to cycle through the fragmentation spectra.