Mass2Motif: motif_245

Return to experiment PhotorhabdusXenorhabdus_LDA_300Mass2Motifs_minMS2Int_25

Mass2Motif Annotation

The following are the full annotation and the short annotation (used for network visualisation) assigned to this Mass2Motif.

Annotation: Taxillaid related Mass2Motif

Short Annotation: Taxillaid related Mass2Motif

Mass2Motif Details

The following table shows the fragment and loss features that are explained by this Mass2Motifs and their corresponding probabilities. After thresholding to save the model, the total probability left in this motif is 0.8670139342320478. The column MAGMa Substructure Annotation shows substructures and the counts of MAGMa annotations for documents linked above threshold to this motif in this experiment. Hovering over each MAGMa substructure shows a plot of the substructure.

Feature Probability MAGMA Substructure Annotation
fragment_380.2525 0.144
fragment_168.1025 0.080
fragment_493.3375 0.077
fragment_281.1875 0.066
fragment_381.2575 0.034
fragment_140.1075 0.025
fragment_494.3425 0.023
fragment_606.4225 0.020
fragment_196.1325 0.018
fragment_210.1475 0.015
fragment_267.1725 0.015
fragment_586.3975 0.012
fragment_308.2125 0.012
fragment_282.1875 0.012
fragment_281.1825 0.008
fragment_394.2675 0.007
fragment_352.2625 0.006
fragment_487.2525 0.006
fragment_288.1925 0.006
fragment_156.0975 0.006
loss_154.1275 0.006
fragment_360.9475 0.006
fragment_352.2575 0.005
fragment_149.0725 0.005
fragment_169.1025 0.005
fragment_479.3225 0.005
loss_59.0725 0.005
fragment_163.0725 0.005
loss_119.8275 0.005
fragment_762.4025 0.005
fragment_224.1725 0.005
fragment_846.5325 0.004
fragment_251.1225 0.004
fragment_233.1325 0.004
loss_104.5925 0.004
fragment_587.3975 0.004
fragment_338.7075 0.004
loss_100.6225 0.004
fragment_567.3725 0.004
fragment_258.1625 0.004
loss_130.0625 0.004
fragment_361.2775 0.004
fragment_678.9475 0.004
fragment_162.1125 0.003
fragment_182.1525 0.003
loss_181.1625 0.003
fragment_487.3275 0.003
fragment_282.1725 0.003
fragment_679.4525 0.003
fragment_893.4425 0.003
loss_151.5975 0.003
loss_156.0725 0.003
fragment_276.1575 0.003
fragment_877.4125 0.003
fragment_279.1175 0.003
fragment_277.1175 0.003
fragment_353.2625 0.003
fragment_607.4225 0.003
fragment_596.2375 0.003
fragment_607.4275 0.003
fragment_719.5075 0.003
fragment_239.1725 0.003
fragment_705.4875 0.003
loss_102.0625 0.003
fragment_156.0775 0.003
fragment_585.3875 0.002
fragment_239.1775 0.002
fragment_408.1575 0.002
fragment_592.4075 0.002
fragment_541.3375 0.002
fragment_578.2275 0.002
fragment_306.2025 0.002
fragment_654.4225 0.002
loss_178.5975 0.002
fragment_182.1475 0.002
fragment_211.1525 0.002
fragment_558.4025 0.002
loss_179.0925 0.002
fragment_767.5075 0.002
fragment_473.3125 0.002
loss_196.5975 0.002
loss_180.0575 0.002
fragment_689.9375 0.002
fragment_618.2925 0.002
fragment_339.2075 0.002
loss_100.1175 0.002
fragment_169.0975 0.002
loss_55.0575 0.002
fragment_480.3275 0.002
fragment_495.3425 0.002
fragment_267.1675 0.002
fragment_191.1525 0.002
loss_185.6075 0.002
fragment_690.4425 0.002
fragment_706.4925 0.002
fragment_864.5525 0.002
loss_118.0025 0.001
loss_118.8225 0.001
fragment_763.4075 0.001
fragment_169.1075 0.001
fragment_203.1175 0.001
fragment_894.4475 0.001
fragment_213.1625 0.001
fragment_326.2025 0.001
fragment_886.5375 0.001
loss_158.6025 0.001
fragment_855.6075 0.001
fragment_977.6375 0.001
fragment_179.1525 0.001
fragment_358.2125 0.001
loss_47.0525 0.001
loss_153.1225 0.001
fragment_259.1725 0.001
fragment_265.0975 0.001
loss_98.0975 0.001
fragment_345.1825 0.001
fragment_742.5225 0.001
fragment_309.2125 0.001
fragment_549.3625 0.001
fragment_366.2375 0.001
fragment_361.6125 0.001
fragment_488.2575 0.001
fragment_286.1775 0.001
loss_134.0375 0.001
fragment_568.3725 0.001
fragment_132.0575 0.001
loss_58.0725 0.001
fragment_999.6175 0.001
fragment_144.0975 0.001
fragment_593.4075 0.001
fragment_395.2475 0.001
fragment_405.1975 0.001
fragment_878.4225 0.001
fragment_382.2625 0.001
fragment_600.3425 0.001

Counts of Mass2Motif Features

Two bar plots will appear below this message. The first shows the proportion of the total intensity of these features explained by this Mass2Motif. Red bars show the total intensity (across the whole dataset), blue bars show the proportion explained by the selected Mass2Motif. The second shows the number of times each feature in this Mass2Motif appears in the documents associated with this Mass2Motif.

Fragmentation Spectra Explained by Mass2Motif

The following table lists all fragmentation spectra that are explained by this Mass2Motif at the threshold specified in the experiment option.

Fragmentation spectra Precursor Mass Parent mass Annotation Probability Overlap Score
document_5935 897.6110 897.6110 None 1.000 0.523
document_6018 968.6830 968.6830 None 0.994 0.536
document_5578 784.5290 784.5290 None 0.990 0.511
document_6081 1067.7510 1067.7510 None 0.986 0.491
document_5821 855.6010 855.6010 None 0.983 0.515
document_5430 742.5190 742.5190 None 0.963 0.390
document_5083 678.9450 678.9450 None 0.958 0.443
document_6055 1032.6740 1032.6740 None 0.957 0.458
document_6051 1018.6590 1018.6590 None 0.942 0.487
document_5177 689.9360 689.9360 None 0.924 0.403
document_3217 439.3270 439.3270 None 0.894 0.453
document_1595 308.2120 308.2120 None 0.864 0.016
document_6127 1171.7710 1171.7710 None 0.842 0.021
document_1606 309.1570 309.1570 None 0.822 0.020
document_6044 1010.6930 1010.6930 None 0.754 0.508
document_5897 882.2270 882.2270 None 0.680 0.066
document_5022 671.9380 671.9380 None 0.676 0.402
document_3994 534.3810 534.3810 None 0.667 0.488
document_3632 484.8480 484.8480 None 0.664 0.396
document_3610 482.3150 482.3150 None 0.634 0.415
document_3685 491.8560 491.8560 None 0.633 0.420
document_4555 606.4200 606.4200 None 0.631 0.448
document_2346 360.9460 360.9460 None 0.630 0.016
document_2365 363.1940 363.1940 None 0.536 0.027
document_5790 846.5260 846.5260 None 0.467 0.029
document_4419 585.3840 585.3840 None 0.461 0.027
document_3695 493.3380 493.3380 None 0.404 0.502
document_5842 861.4350 861.4350 None 0.368 0.491
document_5711 825.5750 825.5750 None 0.331 0.345
document_5522 767.5020 767.5020 None 0.310 0.388
document_5649 808.5500 808.5500 None 0.268 0.345
document_4725 629.3460 629.3460 None 0.235 0.105
document_3575 477.8400 477.8400 None 0.226 0.250
document_5103 681.5300 681.5300 None 0.221 0.352
document_2565 380.2530 380.2530 None 0.209 0.270
document_5109 682.9290 682.9290 None 0.161 0.438
document_6121 1147.7930 1147.7930 None 0.151 0.243
document_3706 494.3340 494.3340 None 0.143 0.380
document_5213 695.4670 695.4670 None 0.129 0.239
document_3234 440.7980 440.7980 None 0.118 0.340
document_5646 807.4990 807.4990 None 0.115 0.243
document_5970 919.5930 919.5930 None 0.114 0.382
document_6124 1169.7750 1169.7750 None 0.109 0.316
document_5645 806.5340 806.5340 None 0.108 0.290
document_5707 824.5440 824.5440 None 0.101 0.279
document_2577 381.2490 381.2490 None 0.093 0.285
document_3712 495.8390 495.8390 None 0.074 0.334
document_2622 384.2560 384.2560 None 0.074 0.123
document_4390 581.9180 581.9180 None 0.070 0.357

Fragmentation Spectra Plot

The fragmentation spectra of molecules explained by this Mass2Motif are plotted below. Features (fragments and losses) explained by this Mass2Motif will be coloured red, while parent ion is coloured in blue. Click Next and Previous to cycle through the fragmentation spectra.