Mass2Motif: motif_186

Return to experiment PhotorhabdusXenorhabdus_LDA_300Mass2Motifs_minMS2Int_25

Mass2Motif Annotation

The following are the full annotation and the short annotation (used for network visualisation) assigned to this Mass2Motif.

Annotation: Pyrrolizidine related Mass2Motif

Short Annotation: Pyrrolizidine related Mass2Motif

Mass2Motif Details

The following table shows the fragment and loss features that are explained by this Mass2Motifs and their corresponding probabilities. After thresholding to save the model, the total probability left in this motif is 0.8669361939234229. The column MAGMa Substructure Annotation shows substructures and the counts of MAGMa annotations for documents linked above threshold to this motif in this experiment. Hovering over each MAGMa substructure shows a plot of the substructure.

Feature Probability MAGMA Substructure Annotation
fragment_139.0875 0.371
fragment_110.0575 0.040
loss_129.1175 0.021
fragment_365.3025 0.018
fragment_326.0975 0.016
fragment_122.0575 0.014
fragment_184.0975 0.012
loss_146.0725 0.012
fragment_140.0875 0.011
loss_157.1075 0.010
fragment_237.1575 0.009
fragment_97.0875 0.008
loss_129.1125 0.007
loss_131.1125 0.007
fragment_144.0625 0.007
loss_159.0775 0.007
loss_190.8225 0.007
fragment_284.7175 0.007
fragment_312.0775 0.007
fragment_351.2875 0.007
loss_51.6175 0.007
fragment_374.9375 0.007
loss_153.6625 0.006
fragment_126.0625 0.006
loss_122.6825 0.006
loss_128.6675 0.005
loss_143.8225 0.005
fragment_140.0825 0.004
fragment_366.3075 0.004
loss_188.8175 0.004
fragment_183.1025 0.004
fragment_375.2725 0.004
loss_102.8075 0.004
loss_128.1125 0.004
fragment_111.0825 0.004
fragment_107.0725 0.004
loss_176.8125 0.004
fragment_296.1925 0.004
loss_127.1025 0.003
fragment_126.1075 0.003
loss_159.7975 0.003
fragment_297.1625 0.003
fragment_109.0875 0.003
loss_79.6175 0.003
fragment_169.1275 0.003
fragment_285.2425 0.003
fragment_165.1025 0.003
loss_141.7725 0.003
loss_120.8075 0.003
loss_139.6575 0.003
fragment_158.1375 0.003
loss_127.7725 0.003
fragment_117.0675 0.003
fragment_327.0975 0.003
loss_146.8175 0.003
loss_20.1125 0.003
fragment_114.0975 0.002
loss_172.1125 0.002
fragment_286.5975 0.002
fragment_403.3575 0.002
loss_143.0975 0.002
fragment_221.0925 0.002
fragment_154.0975 0.002
loss_64.8175 0.002
loss_191.1275 0.002
loss_150.6775 0.002
fragment_151.0875 0.002
fragment_296.5275 0.002
fragment_152.0775 0.002
fragment_318.2375 0.002
loss_105.7075 0.002
fragment_143.0375 0.002
loss_151.6575 0.002
fragment_217.0775 0.002
loss_94.6475 0.002
fragment_474.2725 0.002
fragment_185.1025 0.002
loss_86.0725 0.002
loss_162.7925 0.002
fragment_140.0975 0.002
fragment_98.0675 0.002
loss_141.6725 0.002
loss_174.8075 0.002
fragment_98.0475 0.002
fragment_124.0825 0.002
loss_161.8325 0.002
loss_187.8575 0.002
loss_145.0625 0.002
loss_162.1325 0.002
fragment_95.0825 0.002
loss_118.5875 0.002
loss_178.8325 0.002
loss_85.7975 0.002
fragment_200.1075 0.002
loss_125.7925 0.002
fragment_160.1125 0.002
loss_176.1375 0.002
loss_103.5725 0.002
fragment_372.2725 0.002
loss_108.1225 0.002
fragment_178.0875 0.002
fragment_284.2625 0.002
loss_188.1025 0.002
fragment_299.2825 0.002
fragment_111.0975 0.002
loss_177.7225 0.001
fragment_225.1325 0.001
fragment_182.0825 0.001
fragment_238.1625 0.001
fragment_130.0625 0.001
fragment_370.9375 0.001
fragment_352.2925 0.001
loss_187.1025 0.001
fragment_250.0875 0.001
loss_164.8075 0.001
loss_103.8225 0.001
fragment_371.2675 0.001
fragment_96.0425 0.001
loss_155.8425 0.001
fragment_289.2125 0.001
fragment_377.3875 0.001
loss_25.4625 0.001
fragment_110.0725 0.001
loss_189.1175 0.001
loss_166.1275 0.001
fragment_313.0825 0.001
loss_78.0725 0.001
loss_175.0975 0.001
loss_142.1275 0.001
fragment_197.1025 0.001
loss_95.0825 0.001
loss_177.1075 0.001
loss_127.6475 0.001
loss_138.6725 0.001
loss_163.1225 0.001
fragment_112.0525 0.001
loss_127.1175 0.001
fragment_402.3875 0.001
fragment_285.2775 0.001
fragment_579.5925 0.001
fragment_395.3325 0.001

Counts of Mass2Motif Features

Two bar plots will appear below this message. The first shows the proportion of the total intensity of these features explained by this Mass2Motif. Red bars show the total intensity (across the whole dataset), blue bars show the proportion explained by the selected Mass2Motif. The second shows the number of times each feature in this Mass2Motif appears in the documents associated with this Mass2Motif.

Fragmentation Spectra Explained by Mass2Motif

The following table lists all fragmentation spectra that are explained by this Mass2Motif at the threshold specified in the experiment option.

Fragmentation spectra Precursor Mass Parent mass Annotation Probability Overlap Score
document_1453 298.1620 298.1620 None 0.992 0.444
document_3370 455.2110 455.2110 None 0.974 0.047
document_1426 296.1930 296.1930 None 0.974 0.398
document_3369 455.2110 455.2110 None 0.973 0.062
document_2388 365.3050 365.3050 None 0.973 0.022
document_1244 285.1580 285.1580 None 0.969 0.442
document_2387 365.3050 365.3050 None 0.961 0.022
document_2180 349.2850 349.2850 None 0.934 0.438
document_2157 347.2690 347.2690 None 0.903 0.439
document_3238 441.1950 441.1950 None 0.886 0.068
document_2206 351.2890 351.2890 None 0.866 0.008
document_1032 275.1750 275.1750 None 0.821 0.029
document_1260 285.9070 285.9070 None 0.803 0.468
document_621 248.7460 248.7460 None 0.752 0.077
document_1270 286.2080 286.2080 None 0.736 0.052
document_3567 476.3580 476.3580 None 0.663 0.393
document_2496 374.9370 374.9370 None 0.659 0.015
document_1446 297.1590 297.1590 None 0.633 0.438
document_673 253.1530 253.1530 None 0.610 0.444
document_504 237.1580 237.1580 None 0.610 0.455
document_1746 318.2400 318.2400 None 0.604 0.441
document_505 237.1590 237.1590 None 0.590 0.429
document_1777 321.2530 321.2530 None 0.544 0.444
document_723 257.1280 257.1280 None 0.537 0.434
document_805 262.1180 262.1180 None 0.501 0.435
document_1119 279.2060 279.2060 None 0.500 0.438
document_853 265.1900 265.1900 None 0.498 0.442
document_476 234.1840 234.1840 None 0.484 0.028
document_1515 301.2480 301.2480 None 0.472 0.439
document_319 223.1430 223.1430 None 0.462 0.439
document_2833 402.8510 402.8510 None 0.440 0.398
document_648 251.1740 251.1740 None 0.428 0.426
document_1199 283.1070 283.1070 None 0.369 0.423
document_2415 367.2820 367.2820 None 0.335 0.022
document_67 183.1110 183.1110 None 0.241 0.426
document_307 221.7210 221.7210 None 0.223 0.411
document_854 265.1910 265.1910 None 0.212 0.425
document_2105 344.1810 344.1810 None 0.188 0.383
document_1592 308.1930 308.1930 None 0.185 0.384
document_466 233.1300 233.1300 None 0.164 0.416
document_3523 470.3800 470.3800 None 0.151 0.388
document_633 250.1300 250.1300 None 0.147 0.434
document_4889 653.9020 653.9020 None 0.119 0.371
document_1120 279.2060 279.2060 None 0.106 0.382
document_4946 661.3210 661.3210 None 0.084 0.371
document_1031 275.1740 275.1740 None 0.081 0.389
document_199 209.1260 209.1260 None 0.080 0.415
document_650 251.1750 251.1750 None 0.067 0.412
document_4802 641.3710 641.3710 None 0.061 0.391
document_999 273.9060 273.9060 None 0.053 0.378
document_503 236.2530 236.2530 None 0.052 0.375

Fragmentation Spectra Plot

The fragmentation spectra of molecules explained by this Mass2Motif are plotted below. Features (fragments and losses) explained by this Mass2Motif will be coloured red, while parent ion is coloured in blue. Click Next and Previous to cycle through the fragmentation spectra.