Mass2Motif: motif_116

Return to experiment PhotorhabdusXenorhabdus_LDA_300Mass2Motifs_minMS2Int_25

Mass2Motif Annotation

The following are the full annotation and the short annotation (used for network visualisation) assigned to this Mass2Motif.

Annotation: Interesting motif - small substructure [142, 114 and 196]

Short Annotation: Interesting motif - small substructure [142, 114 and 196]

Mass2Motif Details

The following table shows the fragment and loss features that are explained by this Mass2Motifs and their corresponding probabilities. After thresholding to save the model, the total probability left in this motif is 0.9199533478261387. The column MAGMa Substructure Annotation shows substructures and the counts of MAGMa annotations for documents linked above threshold to this motif in this experiment. Hovering over each MAGMa substructure shows a plot of the substructure.

Feature Probability MAGMA Substructure Annotation
fragment_142.0875 0.417
fragment_114.0875 0.188
fragment_255.1675 0.029
fragment_168.1025 0.024
fragment_134.0975 0.021
fragment_196.1325 0.019
fragment_388.2575 0.017
fragment_143.0875 0.016
fragment_501.3425 0.014
fragment_227.1775 0.012
fragment_213.1625 0.010
fragment_190.0875 0.008
fragment_202.1925 0.006
fragment_354.2725 0.006
fragment_140.1075 0.006
fragment_255.1725 0.006
fragment_275.1725 0.005
fragment_388.2625 0.004
fragment_115.0925 0.004
fragment_303.1725 0.004
fragment_364.2575 0.004
fragment_596.4125 0.004
fragment_614.4275 0.003
fragment_374.2425 0.003
fragment_140.1025 0.003
fragment_295.2025 0.003
loss_177.9525 0.003
loss_155.1225 0.003
loss_116.1375 0.003
fragment_281.1825 0.003
fragment_356.2825 0.003
fragment_162.0925 0.003
fragment_154.1025 0.003
loss_79.0425 0.003
fragment_389.2625 0.002
fragment_256.1725 0.002
fragment_371.2675 0.002
fragment_276.7075 0.002
fragment_182.1175 0.002
fragment_340.2575 0.002
fragment_502.3475 0.002
fragment_234.1825 0.002
fragment_364.7625 0.002
fragment_360.2325 0.002
fragment_326.2275 0.002
fragment_163.6425 0.002
fragment_357.2525 0.002
fragment_266.2125 0.002
fragment_190.0825 0.002
fragment_356.6175 0.001
fragment_100.1025 0.001
fragment_113.0575 0.001
fragment_134.0925 0.001
loss_193.9975 0.001
fragment_314.7275 0.001
fragment_248.2025 0.001
loss_191.1675 0.001
fragment_241.1925 0.001
fragment_307.7175 0.001
fragment_227.1725 0.001
loss_68.0475 0.001
fragment_114.0825 0.001
fragment_360.6275 0.001
fragment_355.2775 0.001
fragment_597.4225 0.001
fragment_467.3575 0.001
loss_88.0975 0.001
loss_80.0475 0.001
fragment_143.0925 0.001
fragment_905.5875 0.001
loss_113.1075 0.001
fragment_227.1675 0.001

Counts of Mass2Motif Features

Two bar plots will appear below this message. The first shows the proportion of the total intensity of these features explained by this Mass2Motif. Red bars show the total intensity (across the whole dataset), blue bars show the proportion explained by the selected Mass2Motif. The second shows the number of times each feature in this Mass2Motif appears in the documents associated with this Mass2Motif.

Fragmentation Spectra Explained by Mass2Motif

The following table lists all fragmentation spectra that are explained by this Mass2Motif at the threshold specified in the experiment option.

Fragmentation spectra Precursor Mass Parent mass Annotation Probability Overlap Score
document_5950 905.6110 905.6110 None 1.000 0.746
document_5599 792.5340 792.5340 None 1.000 0.565
document_4343 574.4310 574.4310 None 0.969 0.676
document_2955 413.7930 413.7930 None 0.839 0.781
document_2578 381.2510 381.2510 None 0.838 0.671
document_3497 467.3580 467.3580 None 0.823 0.685
document_4444 588.4460 588.4460 None 0.806 0.697
document_4485 596.4240 596.4240 None 0.738 0.655
document_4447 589.4420 589.4420 None 0.718 0.723
document_4744 631.4520 631.4520 None 0.656 0.697
document_2890 408.3090 408.3090 None 0.623 0.783
document_2332 360.2650 360.2650 None 0.596 0.013
document_3290 446.3350 446.3350 None 0.588 0.633
document_2751 394.2910 394.2910 None 0.583 0.732
document_2976 415.3170 415.3170 None 0.581 0.718
document_1581 307.0540 307.0540 None 0.574 0.027
document_1223 284.2220 284.2220 None 0.561 0.028
document_5439 745.5180 745.5180 None 0.560 0.693
document_5435 744.5350 744.5350 None 0.551 0.717
document_4350 575.4260 575.4260 None 0.511 0.747
document_3452 462.3430 462.3430 None 0.488 0.710
document_5980 927.6930 927.6930 None 0.486 0.699
document_3272 444.8010 444.8010 None 0.480 0.724
document_2484 373.2600 373.2600 None 0.469 0.625
document_5872 871.6320 871.6320 None 0.465 0.668
document_4221 560.4170 560.4170 None 0.457 0.650
document_5263 702.5240 702.5240 None 0.429 0.716
document_2250 354.2740 354.2740 None 0.417 0.687
document_6039 1004.6830 1004.6830 None 0.410 0.695
document_4370 579.3880 579.3880 None 0.401 0.702
document_5033 673.4990 673.4990 None 0.392 0.688
document_5831 857.6170 857.6170 None 0.387 0.687
document_3695 493.3380 493.3380 None 0.369 0.777
document_5835 858.5980 858.5980 None 0.369 0.683
document_4237 562.3950 562.3950 None 0.366 0.683
document_5939 899.6650 899.6650 None 0.350 0.686
document_5358 723.4970 723.4970 None 0.349 0.704
document_1972 336.9150 336.9150 None 0.337 0.631
document_5049 675.3790 675.3790 None 0.332 0.691
document_4443 588.4470 588.4470 None 0.331 0.674
document_4076 545.3920 545.3920 None 0.319 0.665
document_3143 432.3090 432.3090 None 0.316 0.763
document_2366 363.2740 363.2740 None 0.308 0.721
document_3632 484.8480 484.8480 None 0.285 0.717
document_347 226.1430 226.1430 None 0.280 0.606
document_6019 970.7000 970.7000 None 0.276 0.684
document_3470 464.8510 464.8510 None 0.274 0.759
document_5259 701.5290 701.5290 None 0.270 0.706
document_3835 513.3770 513.3770 None 0.265 0.658
document_3193 437.7930 437.7930 None 0.263 0.802
document_1767 320.7580 320.7580 None 0.259 0.686
document_2373 364.2590 364.2590 None 0.249 0.726
document_4661 620.4560 620.4560 None 0.246 0.716
document_2998 418.8020 418.8020 None 0.244 0.610
document_3685 491.8560 491.8560 None 0.243 0.692
document_3886 521.3930 521.3930 None 0.239 0.734
document_2310 358.2690 358.2690 None 0.238 0.696
document_3568 476.3580 476.3580 None 0.230 0.769
document_3520 470.3350 470.3350 None 0.228 0.750
document_3706 494.3340 494.3340 None 0.228 0.696
document_4613 614.9040 614.9040 None 0.226 0.730
document_5675 814.6110 814.6110 None 0.223 0.708
document_3605 481.3450 481.3450 None 0.218 0.664
document_5353 722.9960 722.9960 None 0.213 0.689
document_3610 482.3150 482.3150 None 0.210 0.747
document_2878 406.7850 406.7850 None 0.208 0.760
document_3874 519.2590 519.2590 None 0.207 0.648
document_1683 313.7510 313.7510 None 0.202 0.686
document_4186 555.8840 555.8840 None 0.201 0.679
document_2565 380.2530 380.2530 None 0.200 0.699
document_4303 570.9270 570.9270 None 0.198 0.672
document_211 212.1270 212.1270 None 0.197 0.607
document_1701 314.7160 314.7160 None 0.195 0.654
document_1334 290.7250 290.7250 None 0.194 0.701
document_5248 699.4770 699.4770 None 0.193 0.696
document_3713 495.8690 495.8690 None 0.190 0.630
document_3830 512.8600 512.8600 None 0.189 0.665
document_2937 412.7850 412.7850 None 0.188 0.685
document_3785 507.3510 507.3510 None 0.178 0.698
document_3574 477.3420 477.3420 None 0.170 0.648
document_3666 488.8510 488.8510 None 0.169 0.756
document_4589 611.9280 611.9280 None 0.168 0.715
document_4723 628.9210 628.9210 None 0.165 0.690
document_5045 674.4930 674.4930 None 0.165 0.683
document_2901 409.3230 409.3230 None 0.164 0.632
document_3017 420.8010 420.8010 None 0.164 0.715
document_4550 604.9210 604.9210 None 0.155 0.703
document_5151 687.5140 687.5140 None 0.150 0.698
document_3648 486.3440 486.3440 None 0.148 0.647
document_2238 353.6990 353.6990 None 0.147 0.653
document_4182 555.3860 555.3860 None 0.145 0.694
document_3152 432.8190 432.8190 None 0.145 0.615
document_4097 548.3790 548.3790 None 0.145 0.684
document_3938 526.8760 526.8760 None 0.145 0.697
document_3259 443.2650 443.2650 None 0.144 0.417
document_3038 422.3120 422.3120 None 0.143 0.645
document_3466 463.8430 463.8430 None 0.143 0.706
document_4445 588.8970 588.8970 None 0.141 0.709
document_3575 477.8400 477.8400 None 0.133 0.695
document_3445 461.3100 461.3100 None 0.133 0.601
document_4294 570.3660 570.3660 None 0.132 0.641
document_3398 456.8350 456.8350 None 0.130 0.698
document_1690 314.2420 314.2420 None 0.130 0.417
document_3234 440.7980 440.7980 None 0.128 0.694
document_5963 914.6730 914.6730 None 0.126 0.642
document_4379 580.4420 580.4420 None 0.126 0.672
document_4543 603.9130 603.9130 None 0.124 0.704
document_5562 778.5180 778.5180 None 0.123 0.675
document_3388 456.3190 456.3190 None 0.119 0.730
document_5923 891.6010 891.6010 None 0.119 0.680
document_5664 812.5600 812.5600 None 0.119 0.665
document_4949 661.4630 661.4630 None 0.117 0.708
document_2215 351.7670 351.7670 None 0.115 0.656
document_2637 385.1770 385.1770 None 0.113 0.605
document_1682 313.6070 313.6070 None 0.112 0.620
document_5326 715.5450 715.5450 None 0.112 0.646
document_3459 463.3270 463.3270 None 0.112 0.788
document_4466 592.3570 592.3570 None 0.111 0.652
document_4628 616.4040 616.4040 None 0.111 0.701
document_1772 321.1440 321.1440 None 0.111 0.650
document_3319 449.8270 449.8270 None 0.110 0.694
document_5159 688.5090 688.5090 None 0.109 0.719
document_3303 447.3330 447.3330 None 0.108 0.627
document_3400 457.2800 457.2800 None 0.105 0.417
document_2595 382.7860 382.7860 None 0.104 0.666
document_5630 800.5960 800.5960 None 0.104 0.696
document_5327 716.5030 716.5030 None 0.103 0.653
document_4014 538.3850 538.3850 None 0.103 0.740
document_3821 512.2490 512.2490 None 0.103 0.616
document_1650 312.2270 312.2270 None 0.102 0.605
document_2764 395.7990 395.7990 None 0.102 0.689
document_2984 416.3060 416.3060 None 0.101 0.638
document_3780 506.3690 506.3690 None 0.100 0.730
document_2521 377.3010 377.3010 None 0.100 0.675
document_2156 347.2670 347.2670 None 0.099 0.692
document_3586 478.8540 478.8540 None 0.099 0.708
document_4141 552.4100 552.4100 None 0.099 0.674
document_2171 348.2640 348.2640 None 0.098 0.633
document_5631 801.5920 801.5920 None 0.096 0.662
document_2954 413.7930 413.7930 None 0.096 0.758
document_2695 388.2590 388.2590 None 0.095 0.644
document_3973 531.3760 531.3760 None 0.095 0.634
document_4536 602.3880 602.3880 None 0.094 0.624
document_2023 340.2590 340.2590 None 0.094 0.640
document_4998 668.9130 668.9130 None 0.093 0.635
document_4455 590.9220 590.9220 None 0.093 0.617
document_4027 539.3730 539.3730 None 0.092 0.673
document_2448 370.2930 370.2930 None 0.088 0.641
document_5270 703.5070 703.5070 None 0.088 0.624
document_2185 349.7670 349.7670 None 0.085 0.668
document_2790 398.3120 398.3120 None 0.083 0.689
document_2270 355.6060 355.6060 None 0.083 0.639
document_2249 354.2740 354.2740 None 0.082 0.637
document_4867 650.9140 650.9140 None 0.082 0.632
document_1868 327.7660 327.7660 None 0.080 0.677
document_3311 448.8150 448.8150 None 0.079 0.615
document_3289 446.3350 446.3350 None 0.077 0.635
document_3215 439.3270 439.3270 None 0.074 0.658
document_1768 320.7590 320.7590 None 0.073 0.613
document_3994 534.3810 534.3810 None 0.072 0.663
document_1646 312.2270 312.2270 None 0.070 0.671
document_3957 530.2490 530.2490 None 0.069 0.605
document_3553 474.8350 474.8350 None 0.069 0.646
document_4390 581.9180 581.9180 None 0.069 0.661
document_2190 350.2430 350.2430 None 0.068 0.660
document_1966 336.2540 336.2540 None 0.068 0.669
document_1780 321.7330 321.7330 None 0.068 0.640
document_4634 617.4360 617.4360 None 0.066 0.615
document_3563 475.8770 475.8770 None 0.064 0.627
document_5522 767.5020 767.5020 None 0.064 0.691
document_3608 481.8430 481.8430 None 0.063 0.765
document_5729 829.4080 829.4080 None 0.063 0.436
document_2105 344.1810 344.1810 None 0.063 0.419
document_3748 501.3890 501.3890 None 0.062 0.618
document_2694 388.2580 388.2580 None 0.059 0.627
document_4555 606.4200 606.4200 None 0.058 0.683
document_2826 402.3300 402.3300 None 0.056 0.602
document_2622 384.2560 384.2560 None 0.056 0.654
document_3841 514.3850 514.3850 None 0.054 0.734
document_5315 713.4930 713.4930 None 0.053 0.650
document_4629 616.4070 616.4070 None 0.052 0.643
document_2846 403.8080 403.8080 None 0.052 0.635
document_2959 414.2190 414.2190 None 0.051 0.429
document_2642 385.2920 385.2920 None 0.051 0.619
document_4501 597.9130 597.9130 None 0.050 0.685

Fragmentation Spectra Plot

The fragmentation spectra of molecules explained by this Mass2Motif are plotted below. Features (fragments and losses) explained by this Mass2Motif will be coloured red, while parent ion is coloured in blue. Click Next and Previous to cycle through the fragmentation spectra.