Mass2Motif: motif_221

Return to experiment PhotorhabdusXenorhabdus_LDA_300Mass2Motifs_minMS2Int_25

Mass2Motif Annotation

The following are the full annotation and the short annotation (used for network visualisation) assigned to this Mass2Motif.

Annotation: small peptidic substructure

Short Annotation: small peptidic substructure

Mass2Motif Details

The following table shows the fragment and loss features that are explained by this Mass2Motifs and their corresponding probabilities. After thresholding to save the model, the total probability left in this motif is 0.79848511416388. The column MAGMa Substructure Annotation shows substructures and the counts of MAGMa annotations for documents linked above threshold to this motif in this experiment. Hovering over each MAGMa substructure shows a plot of the substructure.

Feature Probability MAGMA Substructure Annotation
fragment_244.1325 0.405
fragment_147.0775 0.035
fragment_227.1025 0.019
fragment_217.1275 0.017
fragment_245.1325 0.017
fragment_197.1275 0.016
fragment_147.0725 0.014
fragment_120.0775 0.013
fragment_211.1425 0.013
fragment_147.0825 0.013
fragment_136.0725 0.010
fragment_130.0575 0.008
fragment_568.3825 0.007
fragment_115.0825 0.007
fragment_130.0525 0.006
fragment_310.2125 0.006
fragment_129.1025 0.006
fragment_169.1275 0.006
fragment_331.6725 0.006
fragment_101.0675 0.005
fragment_183.1425 0.005
fragment_342.1825 0.005
fragment_226.1275 0.005
fragment_326.2025 0.005
fragment_213.1175 0.004
loss_147.0975 0.004
fragment_385.2075 0.004
fragment_97.0725 0.004
loss_158.5975 0.004
loss_146.6225 0.004
loss_157.5975 0.004
fragment_588.3525 0.004
loss_146.6175 0.004
fragment_226.1175 0.004
fragment_226.1325 0.003
fragment_226.1225 0.003
fragment_203.1025 0.003
fragment_314.1675 0.003
fragment_381.2075 0.003
fragment_245.1275 0.003
fragment_104.0525 0.003
fragment_263.1375 0.003
fragment_183.1375 0.003
fragment_569.3875 0.003
fragment_185.1575 0.003
loss_59.0825 0.002
loss_192.1125 0.002
fragment_504.2725 0.002
fragment_157.1325 0.002
fragment_784.3975 0.002
fragment_559.3225 0.002
fragment_129.0875 0.002
fragment_583.8375 0.002
loss_157.0875 0.002
fragment_345.1775 0.002
fragment_316.1625 0.002
fragment_169.1225 0.002
fragment_227.1075 0.002
loss_59.5575 0.002
fragment_181.1325 0.002
fragment_299.2075 0.002
fragment_169.1175 0.002
fragment_233.1175 0.002
fragment_413.2775 0.001
fragment_341.1825 0.001
fragment_197.1475 0.001
fragment_101.0875 0.001
loss_193.1525 0.001
fragment_537.3775 0.001
fragment_101.0725 0.001
fragment_102.0525 0.001
fragment_441.2525 0.001
fragment_185.1125 0.001
fragment_226.1425 0.001
fragment_402.7275 0.001
loss_42.9325 0.001
fragment_284.2925 0.001
fragment_588.3025 0.001
fragment_584.3375 0.001
loss_110.5375 0.001
fragment_310.2075 0.001
fragment_212.1125 0.001
fragment_212.1175 0.001
fragment_341.2525 0.001
fragment_211.1625 0.001
fragment_295.6775 0.001
fragment_753.4475 0.001
loss_163.6475 0.001
fragment_461.2425 0.001
loss_164.6225 0.001
fragment_475.2625 0.001
fragment_765.4675 0.001
fragment_806.4125 0.001
fragment_427.2575 0.001
loss_188.1175 0.001
fragment_125.1125 0.001
fragment_227.1125 0.001
fragment_402.9725 0.001

Counts of Mass2Motif Features

Two bar plots will appear below this message. The first shows the proportion of the total intensity of these features explained by this Mass2Motif. Red bars show the total intensity (across the whole dataset), blue bars show the proportion explained by the selected Mass2Motif. The second shows the number of times each feature in this Mass2Motif appears in the documents associated with this Mass2Motif.

Fragmentation Spectra Explained by Mass2Motif

The following table lists all fragmentation spectra that are explained by this Mass2Motif at the threshold specified in the experiment option.

Fragmentation spectra Precursor Mass Parent mass Annotation Probability Overlap Score
document_6110 1113.7650 1113.7650 None 0.975 0.010
document_2831 402.7270 402.7270 None 0.949 0.553
document_2722 390.7520 390.7520 None 0.895 0.583
document_3628 484.3130 484.3130 None 0.849 0.479
document_2818 401.7260 401.7260 None 0.824 0.512
document_2727 391.2320 391.2320 None 0.790 0.532
document_5464 753.4470 753.4470 None 0.745 0.501
document_2724 390.7520 390.7520 None 0.735 0.572
document_5355 723.4360 723.4360 None 0.640 0.561
document_1862 327.2260 327.2260 None 0.619 0.011
document_4280 568.3820 568.3820 None 0.609 0.031
document_4407 583.8250 583.8250 None 0.587 0.423
document_5079 678.4150 678.4150 None 0.514 0.525
document_2639 385.2090 385.2090 None 0.507 0.010
document_3761 504.2450 504.2450 None 0.488 0.462
document_5365 724.4930 724.4930 None 0.481 0.530
document_5569 781.4570 781.4570 None 0.468 0.585
document_5510 765.4830 765.4830 None 0.459 0.547
document_4803 641.3270 641.3270 None 0.439 0.550
document_4235 562.2890 562.2890 None 0.393 0.521
document_5643 806.4040 806.4040 None 0.365 0.525
document_2675 387.2430 387.2430 None 0.349 0.549
document_4484 596.3590 596.3590 None 0.321 0.525
document_3222 440.2500 440.2500 None 0.320 0.557
document_4648 619.2920 619.2920 None 0.270 0.535
document_3223 440.2490 440.2490 None 0.266 0.525
document_3109 428.4240 428.4240 None 0.242 0.507
document_2557 379.7080 379.7080 None 0.235 0.524
document_5511 765.4830 765.4830 None 0.231 0.502
document_1986 337.6780 337.6780 None 0.224 0.517
document_5546 773.4200 773.4200 None 0.224 0.437
document_5565 780.4930 780.4930 None 0.221 0.459
document_2604 383.2470 383.2470 None 0.199 0.546
document_2519 377.2280 377.2280 None 0.195 0.546
document_5338 718.3580 718.3580 None 0.186 0.448
document_3635 485.2400 485.2400 None 0.178 0.508
document_6025 984.5100 984.5100 None 0.174 0.458
document_2529 378.2000 378.2000 None 0.171 0.562
document_4789 639.3840 639.3840 None 0.164 0.512
document_3502 468.2450 468.2450 None 0.162 0.529
document_2866 405.7100 405.7100 None 0.161 0.503
document_4706 627.3630 627.3630 None 0.154 0.452
document_4504 598.3390 598.3390 None 0.149 0.557
document_4631 617.3280 617.3280 None 0.145 0.506
document_5466 753.7580 753.7580 None 0.144 0.405
document_4883 652.8350 652.8350 None 0.128 0.532
document_4573 609.3380 609.3380 None 0.126 0.560
document_3970 531.3030 531.3030 None 0.123 0.440
document_4234 562.2890 562.2890 None 0.122 0.531
document_4509 599.3530 599.3530 None 0.116 0.521
document_4380 580.8370 580.8370 None 0.116 0.454
document_5219 696.3960 696.3960 None 0.114 0.469
document_3705 494.3340 494.3340 None 0.114 0.506
document_5624 799.4410 799.4410 None 0.114 0.527
document_4038 540.3170 540.3170 None 0.114 0.499
document_1969 336.9140 336.9140 None 0.110 0.493
document_3721 497.0880 497.0880 None 0.109 0.504
document_2083 342.9180 342.9180 None 0.106 0.487
document_5315 713.4930 713.4930 None 0.104 0.422
document_5070 677.3630 677.3630 None 0.104 0.542
document_2719 390.4090 390.4090 None 0.101 0.511
document_5249 699.4770 699.4770 None 0.101 0.477
document_2552 379.6140 379.6140 None 0.099 0.485
document_4436 587.7770 587.7770 None 0.099 0.474
document_5145 686.8830 686.8830 None 0.097 0.418
document_3760 504.2440 504.2440 None 0.095 0.453
document_4157 553.3330 553.3330 None 0.093 0.475
document_5363 724.3360 724.3360 None 0.093 0.450
document_4891 654.3770 654.3770 None 0.092 0.517
document_3853 516.1710 516.1710 None 0.092 0.437
document_4388 581.8160 581.8160 None 0.092 0.535
document_5884 877.4480 877.4480 None 0.091 0.499
document_1994 338.2460 338.2460 None 0.090 0.418
document_4829 645.3230 645.3230 None 0.090 0.481
document_3690 492.7620 492.7620 None 0.089 0.459
document_1526 302.1600 302.1600 None 0.089 0.545
document_5529 770.3590 770.3590 None 0.088 0.450
document_3709 495.2940 495.2940 None 0.086 0.444
document_4406 583.4630 583.4630 None 0.086 0.475
document_5428 742.4450 742.4450 None 0.084 0.514
document_4612 614.8340 614.8340 None 0.083 0.470
document_4952 661.8700 661.8700 None 0.083 0.496
document_4049 541.2840 541.2840 None 0.082 0.405
document_4414 585.1450 585.1450 None 0.081 0.476
document_5470 754.4690 754.4690 None 0.080 0.463
document_6010 960.5110 960.5110 None 0.080 0.524
document_6083 1069.6790 1069.6790 None 0.080 0.405
document_3961 530.2960 530.2960 None 0.078 0.439
document_4931 659.3380 659.3380 None 0.077 0.540
document_5423 741.3900 741.3900 None 0.076 0.504
document_4788 639.3480 639.3480 None 0.074 0.531
document_4994 668.3580 668.3580 None 0.074 0.406
document_5293 708.4150 708.4150 None 0.072 0.440
document_3792 508.2760 508.2760 None 0.070 0.496
document_4819 643.3790 643.3790 None 0.070 0.539
document_5847 863.4240 863.4240 None 0.070 0.450
document_5468 754.4130 754.4130 None 0.069 0.475
document_5472 754.9540 754.9540 None 0.069 0.436
document_4809 641.8700 641.8700 None 0.068 0.451
document_3995 534.3990 534.3990 None 0.068 0.490
document_6040 1006.5200 1006.5200 None 0.068 0.441
document_4684 624.2440 624.2440 None 0.068 0.553
document_5664 812.5600 812.5600 None 0.068 0.422
document_4989 667.8420 667.8420 None 0.065 0.493
document_5318 714.3790 714.3790 None 0.064 0.544
document_4676 623.3380 623.3380 None 0.063 0.574
document_5126 684.3900 684.3900 None 0.062 0.548
document_5989 938.5170 938.5170 None 0.061 0.414
document_5580 786.4270 786.4270 None 0.061 0.453
document_4120 551.2460 551.2460 None 0.059 0.518
document_5467 754.4060 754.4060 None 0.059 0.425
document_4793 639.8570 639.8570 None 0.059 0.523
document_4617 615.3330 615.3330 None 0.058 0.523
document_4669 622.3370 622.3370 None 0.058 0.496
document_4984 667.3270 667.3270 None 0.058 0.527
document_4283 568.8370 568.8370 None 0.058 0.470
document_4382 581.3630 581.3630 None 0.057 0.496
document_3578 478.2660 478.2660 None 0.057 0.468
document_2961 414.2250 414.2250 None 0.056 0.470
document_5551 775.9510 775.9510 None 0.055 0.473
document_5241 698.7270 698.7270 None 0.055 0.467
document_4452 590.3900 590.3900 None 0.054 0.434
document_4131 552.2900 552.2900 None 0.054 0.471
document_5370 726.3780 726.3780 None 0.054 0.448
document_4007 536.3540 536.3540 None 0.054 0.505
document_3883 520.3840 520.3840 None 0.054 0.411
document_3731 499.2550 499.2550 None 0.053 0.480
document_4547 604.3540 604.3540 None 0.053 0.481
document_2201 350.9300 350.9300 None 0.052 0.433
document_1916 332.2610 332.2610 None 0.052 0.444
document_4924 658.3210 658.3210 None 0.052 0.464
document_4774 637.4260 637.4260 None 0.052 0.559
document_4517 600.4100 600.4100 None 0.052 0.425
document_3810 511.3310 511.3310 None 0.051 0.513
document_4565 607.8260 607.8260 None 0.051 0.462
document_4413 584.8230 584.8230 None 0.051 0.471
document_3254 443.2180 443.2180 None 0.051 0.440

Fragmentation Spectra Plot

The fragmentation spectra of molecules explained by this Mass2Motif are plotted below. Features (fragments and losses) explained by this Mass2Motif will be coloured red, while parent ion is coloured in blue. Click Next and Previous to cycle through the fragmentation spectra.