Mass2Motif: motif_272

Return to experiment PhotorhabdusXenorhabdus_LDA_300Mass2Motifs_minMS2Int_25

Mass2Motif Annotation

The following are the full annotation and the short annotation (used for network visualisation) assigned to this Mass2Motif.

Annotation: Interesting motif - peptidic nature

Short Annotation: Interesting motif - peptidic nature

Mass2Motif Details

The following table shows the fragment and loss features that are explained by this Mass2Motifs and their corresponding probabilities. After thresholding to save the model, the total probability left in this motif is 0.775499753597031. The column MAGMa Substructure Annotation shows substructures and the counts of MAGMa annotations for documents linked above threshold to this motif in this experiment. Hovering over each MAGMa substructure shows a plot of the substructure.

Feature Probability MAGMA Substructure Annotation
fragment_383.2275 0.175
fragment_627.3475 0.032
fragment_384.2325 0.023
fragment_286.1775 0.022
fragment_235.1425 0.017
fragment_399.2025 0.016
fragment_628.3525 0.013
fragment_217.1325 0.012
fragment_790.4125 0.012
fragment_155.0825 0.010
fragment_627.3525 0.010
loss_74.0025 0.010
loss_114.0775 0.007
fragment_263.1375 0.007
fragment_229.1375 0.007
fragment_543.3175 0.007
fragment_300.1925 0.007
fragment_427.1375 0.007
loss_148.5825 0.007
fragment_337.2725 0.007
fragment_247.0875 0.007
loss_96.8875 0.007
loss_173.6275 0.007
loss_129.1125 0.007
fragment_493.3775 0.007
loss_70.0475 0.007
loss_162.0725 0.007
fragment_199.1425 0.006
fragment_334.1175 0.006
loss_93.0225 0.006
fragment_158.0625 0.006
loss_109.8975 0.006
fragment_526.3125 0.006
loss_62.0175 0.006
fragment_498.3175 0.006
fragment_312.1975 0.006
loss_82.8725 0.006
fragment_117.0525 0.006
loss_118.5575 0.006
loss_87.0775 0.006
fragment_530.2975 0.005
loss_157.1125 0.005
fragment_791.4175 0.005
fragment_337.2225 0.005
loss_108.8875 0.004
fragment_380.2925 0.004
fragment_365.2175 0.004
fragment_282.1925 0.004
fragment_303.0775 0.004
fragment_174.1275 0.004
loss_130.0175 0.004
loss_129.0525 0.004
fragment_889.4775 0.004
fragment_661.3375 0.003
fragment_425.1075 0.003
fragment_96.9375 0.003
fragment_228.1375 0.003
loss_159.0675 0.003
loss_182.1075 0.003
fragment_230.1425 0.003
loss_46.0425 0.003
fragment_408.1925 0.003
fragment_204.0975 0.003
fragment_252.1325 0.003
loss_95.5425 0.003
fragment_183.1375 0.003
fragment_629.3575 0.003
loss_197.0775 0.003
fragment_136.0725 0.002
loss_114.5975 0.002
fragment_230.1525 0.002
fragment_463.2575 0.002
fragment_562.2675 0.002
loss_111.0325 0.002
loss_143.0975 0.002
fragment_316.1075 0.002
fragment_215.1375 0.002
loss_88.9875 0.002
fragment_127.0825 0.002
loss_150.6575 0.002
fragment_544.3175 0.002
fragment_312.1925 0.002
fragment_271.1325 0.002
loss_128.0525 0.002
fragment_890.4825 0.002
fragment_137.9625 0.002
fragment_183.1475 0.002
fragment_494.3775 0.002
fragment_120.0775 0.002
loss_82.0475 0.002
fragment_230.1375 0.002
loss_51.5875 0.002
fragment_336.2625 0.002
fragment_603.3075 0.002
fragment_385.2325 0.002
loss_112.0025 0.002
loss_181.1025 0.002
loss_102.5825 0.002
fragment_612.8775 0.002
fragment_395.2625 0.002
fragment_889.4825 0.002
fragment_171.1475 0.002
fragment_553.3375 0.002
loss_180.6175 0.002
fragment_114.9475 0.002
fragment_197.1175 0.002
fragment_212.1125 0.002
fragment_428.1425 0.002
fragment_507.2625 0.002
fragment_499.3225 0.001
fragment_282.1825 0.001
fragment_287.1775 0.001
fragment_130.0625 0.001
fragment_400.2075 0.001
loss_81.8625 0.001
fragment_213.1325 0.001
loss_160.6025 0.001
loss_194.5875 0.001
fragment_609.3375 0.001
fragment_142.1225 0.001
fragment_811.4775 0.001
loss_195.0425 0.001
loss_161.0725 0.001
fragment_651.4175 0.001
fragment_613.3775 0.001
fragment_706.4825 0.001
loss_163.1025 0.001
fragment_707.3775 0.001
fragment_236.1475 0.001
fragment_195.1475 0.001
loss_65.5475 0.001
fragment_338.2775 0.001
fragment_106.0625 0.001
fragment_531.2975 0.001
fragment_172.0775 0.001
fragment_527.3175 0.001
loss_182.5875 0.001
fragment_248.0875 0.001
loss_72.9975 0.001
fragment_593.4025 0.001
loss_61.4925 0.001
loss_61.0125 0.001
fragment_619.2975 0.001
fragment_231.1425 0.001
loss_146.5925 0.001
fragment_169.1075 0.001
loss_146.1025 0.001
loss_95.8825 0.001
loss_114.0725 0.001
loss_86.1125 0.001
fragment_98.0375 0.001
fragment_145.0875 0.001
fragment_301.1925 0.001
loss_81.5375 0.001
fragment_261.1225 0.001
fragment_479.2675 0.001
fragment_270.1425 0.001
fragment_494.3325 0.001
fragment_426.1075 0.001
fragment_620.3425 0.001
fragment_505.2425 0.001
loss_160.5625 0.001
fragment_652.4025 0.001

Counts of Mass2Motif Features

Two bar plots will appear below this message. The first shows the proportion of the total intensity of these features explained by this Mass2Motif. Red bars show the total intensity (across the whole dataset), blue bars show the proportion explained by the selected Mass2Motif. The second shows the number of times each feature in this Mass2Motif appears in the documents associated with this Mass2Motif.

Fragmentation Spectra Explained by Mass2Motif

The following table lists all fragmentation spectra that are explained by this Mass2Motif at the threshold specified in the experiment option.

Fragmentation spectra Precursor Mass Parent mass Annotation Probability Overlap Score
document_6080 1063.6300 1063.6300 None 0.964 0.009
document_4374 580.3080 580.3080 None 0.919 0.342
document_3090 427.1380 427.1380 None 0.895 0.030
document_1983 337.2740 337.2740 None 0.884 0.008
document_6095 1089.5861 1089.5861 None 0.831 0.391
document_5917 889.4760 889.4760 None 0.807 0.397
document_1771 321.0870 321.0870 None 0.800 0.023
document_2527 377.7340 377.7340 None 0.782 0.075
document_5911 887.4600 887.4600 None 0.766 0.380
document_3274 445.2450 445.2450 None 0.745 0.408
document_6038 1002.5570 1002.5570 None 0.733 0.377
document_4073 545.3020 545.3020 None 0.729 0.417
document_5590 790.4090 790.4090 None 0.703 0.372
document_368 226.9510 226.9510 None 0.694 0.049
document_1289 287.1750 287.1750 None 0.656 0.029
document_4705 627.3480 627.3480 None 0.617 0.374
document_4896 654.8960 654.8960 None 0.607 0.075
document_3749 501.7870 501.7870 None 0.592 0.363
document_72 184.1490 184.1490 None 0.591 0.014
document_4679 623.4100 623.4100 None 0.528 0.272
document_1535 302.7280 302.7280 None 0.490 0.010
document_5476 756.4040 756.4040 None 0.487 0.349
document_748 258.1590 258.1590 None 0.484 0.010
document_4886 653.4730 653.4730 None 0.479 0.013
document_4667 621.8770 621.8770 None 0.466 0.304
document_5546 773.4200 773.4200 None 0.375 0.243
document_3750 501.7870 501.7870 None 0.268 0.083
document_6040 1006.5200 1006.5200 None 0.258 0.235
document_6029 990.5220 990.5220 None 0.231 0.216
document_4748 632.8320 632.8320 None 0.192 0.299
document_4856 649.3860 649.3860 None 0.176 0.242
document_5491 760.8900 760.8900 None 0.152 0.249
document_3700 493.7710 493.7710 None 0.144 0.360
document_6134 1213.6480 1213.6480 None 0.136 0.314
document_2121 345.1830 345.1830 None 0.136 0.031
document_5584 788.4300 788.4300 None 0.136 0.229
document_6026 986.5260 986.5260 None 0.130 0.370
document_4938 659.8540 659.8540 None 0.107 0.197
document_1773 321.1660 321.1660 None 0.099 0.038
document_4668 622.3210 622.3210 None 0.092 0.277
document_3964 530.7740 530.7740 None 0.088 0.256
document_3681 490.8130 490.8130 None 0.083 0.253
document_3692 492.8220 492.8220 None 0.079 0.243
document_5467 754.4060 754.4060 None 0.075 0.253
document_3686 492.2810 492.2810 None 0.072 0.094
document_3244 441.7110 441.7110 None 0.068 0.198
document_4952 661.8700 661.8700 None 0.066 0.293
document_5910 887.4600 887.4600 None 0.060 0.304

Fragmentation Spectra Plot

The fragmentation spectra of molecules explained by this Mass2Motif are plotted below. Features (fragments and losses) explained by this Mass2Motif will be coloured red, while parent ion is coloured in blue. Click Next and Previous to cycle through the fragmentation spectra.