Mass2Motif: motif_51

Return to experiment PhotorhabdusXenorhabdus_LDA_300Mass2Motifs_minMS2Int_25

Mass2Motif Annotation

The following are the full annotation and the short annotation (used for network visualisation) assigned to this Mass2Motif.

Annotation: small peptidic substructure (m/z 105, 230, 123)

Short Annotation: small peptidic substructure

Mass2Motif Details

The following table shows the fragment and loss features that are explained by this Mass2Motifs and their corresponding probabilities. After thresholding to save the model, the total probability left in this motif is 0.8532790329807296. The column MAGMa Substructure Annotation shows substructures and the counts of MAGMa annotations for documents linked above threshold to this motif in this experiment. Hovering over each MAGMa substructure shows a plot of the substructure.

Feature Probability MAGMA Substructure Annotation
fragment_105.0325 0.176
fragment_271.1325 0.069
fragment_229.0875 0.052
fragment_271.0575 0.030
fragment_123.0425 0.026
fragment_173.1525 0.025
fragment_115.1075 0.020
fragment_229.0975 0.016
fragment_640.4475 0.015
fragment_256.0375 0.014
fragment_230.0875 0.013
fragment_106.0375 0.012
fragment_640.9475 0.012
fragment_117.0875 0.011
loss_188.0825 0.010
fragment_272.1375 0.010
fragment_214.1525 0.008
fragment_179.0725 0.008
loss_174.0975 0.008
fragment_229.1625 0.008
loss_166.1025 0.008
loss_11.1025 0.008
loss_124.0525 0.008
fragment_553.2975 0.008
fragment_611.4225 0.008
fragment_315.1675 0.008
loss_88.1025 0.008
fragment_351.2775 0.008
fragment_412.1875 0.007
fragment_172.2075 0.007
fragment_200.2375 0.007
fragment_450.0975 0.007
fragment_231.1975 0.007
loss_197.2125 0.006
fragment_185.1325 0.006
fragment_596.5725 0.006
loss_199.2325 0.006
loss_185.2125 0.006
loss_171.1975 0.005
fragment_611.9275 0.005
fragment_637.9675 0.005
fragment_186.2225 0.005
fragment_640.4525 0.005
fragment_137.0225 0.005
fragment_641.4475 0.005
fragment_198.2225 0.005
loss_183.1975 0.004
fragment_243.1775 0.004
fragment_176.1075 0.004
fragment_241.1225 0.004
loss_173.0475 0.004
fragment_184.2075 0.004
fragment_597.5775 0.004
fragment_228.0425 0.004
fragment_175.1325 0.003
loss_187.0775 0.003
fragment_165.0925 0.003
fragment_200.0475 0.003
fragment_638.4725 0.003
loss_182.0925 0.003
fragment_260.2375 0.003
fragment_470.3625 0.003
fragment_424.3225 0.003
loss_63.0275 0.003
fragment_352.1625 0.003
fragment_233.1775 0.002
loss_39.0925 0.002
fragment_543.3175 0.002
fragment_612.4275 0.002
fragment_219.1375 0.002
fragment_270.1475 0.002
loss_81.0375 0.002
fragment_272.1975 0.002
fragment_442.3325 0.002
fragment_554.3025 0.002
loss_170.0725 0.002
fragment_452.3525 0.002
fragment_468.1025 0.002
fragment_436.2225 0.002
loss_182.0975 0.002
fragment_609.3875 0.002
fragment_219.1475 0.002
fragment_316.1725 0.002
loss_135.0625 0.002
fragment_288.2675 0.002
loss_148.0925 0.002
fragment_272.0575 0.002
loss_40.9775 0.002
fragment_445.2325 0.002
fragment_468.3475 0.002
fragment_101.0925 0.002
loss_193.0475 0.002
loss_92.0625 0.002
fragment_136.0775 0.002
loss_67.0925 0.001
loss_179.8975 0.001
fragment_242.1725 0.001
fragment_451.0975 0.001
fragment_273.0525 0.001
fragment_418.4025 0.001
fragment_638.4825 0.001
fragment_413.1925 0.001
fragment_227.0825 0.001
fragment_247.1475 0.001
loss_173.0925 0.001
fragment_310.1675 0.001
loss_135.0875 0.001
fragment_97.0975 0.001
fragment_276.1725 0.001
loss_42.0475 0.001
fragment_363.0825 0.001
fragment_183.0825 0.001
fragment_213.0725 0.001
loss_106.0425 0.001
fragment_281.1175 0.001
loss_53.7925 0.001
fragment_544.5125 0.001

Counts of Mass2Motif Features

Two bar plots will appear below this message. The first shows the proportion of the total intensity of these features explained by this Mass2Motif. Red bars show the total intensity (across the whole dataset), blue bars show the proportion explained by the selected Mass2Motif. The second shows the number of times each feature in this Mass2Motif appears in the documents associated with this Mass2Motif.

Fragmentation Spectra Explained by Mass2Motif

The following table lists all fragmentation spectra that are explained by this Mass2Motif at the threshold specified in the experiment option.

Fragmentation spectraPrecursor MassParent massAnnotationProbabilityOverlap Score
document_4801 640.9440 640.9440 None 1.000 0.112
document_3403 457.4470 457.4470 None 1.000 0.225
document_968 271.1330 271.1330 None 0.996 0.320
document_891 267.1370 267.1370 None 0.989 0.273
document_1381 293.1150 293.1150 None 0.987 0.319
document_3389 456.3470 456.3470 None 0.976 0.379
document_3506 468.3470 468.3470 None 0.975 0.390
document_409 229.0850 229.0850 None 0.974 0.229
document_3361 454.3320 454.3320 None 0.970 0.311
document_1629 311.1250 311.1250 None 0.949 0.250
document_4153 553.2990 553.2990 None 0.945 0.010
document_3521 470.3630 470.3630 None 0.944 0.399
document_107 193.1320 193.1320 None 0.943 0.199
document_3250 442.3310 442.3310 None 0.924 0.392
document_4570 608.9450 608.9450 None 0.921 0.097
document_4064 543.3140 543.3140 None 0.866 0.364
document_2205 351.2780 351.2780 None 0.837 0.008
document_4762 635.4880 635.4880 None 0.829 0.115
document_4782 637.9650 637.9650 None 0.795 0.128
document_2929 412.1860 412.1860 None 0.684 0.210
document_3275 445.2290 445.2290 None 0.675 0.372
document_4503 598.3020 598.3020 None 0.644 0.032
document_965 271.0600 271.0600 None 0.555 0.254
document_930 269.1860 269.1860 None 0.476 0.296
document_3501 468.1070 468.1070 None 0.469 0.051
document_4035 540.3100 540.3100 None 0.308 0.034
document_4117 550.9030 550.9030 None 0.279 0.062
document_2930 412.2340 412.2340 None 0.261 0.310
document_869 266.5100 266.5100 None 0.205 0.214
document_1563 305.2070 305.2070 None 0.199 0.176
document_4245 563.2400 563.2400 None 0.190 0.323
document_3174 436.2120 436.2120 None 0.183 0.297
document_4373 579.9240 579.9240 None 0.147 0.050
document_1294 287.2700 287.2700 None 0.109 0.238
document_1311 289.0830 289.0830 None 0.107 0.189
document_2547 379.2460 379.2460 None 0.106 0.289
document_1997 338.2680 338.2680 None 0.097 0.176
document_3513 469.7660 469.7660 None 0.091 0.255
document_4841 647.3110 647.3110 None 0.088 0.257
document_394 228.1370 228.1370 None 0.070 0.187
document_3311 448.8150 448.8150 None 0.070 0.271
document_2822 402.2280 402.2280 None 0.068 0.270
document_2094 343.2950 343.2950 None 0.065 0.187
document_3964 530.7740 530.7740 None 0.058 0.281
document_5383 729.3830 729.3830 None 0.058 0.270

Fragmentation Spectra Plot

The fragmentation spectra of molecules explained by this Mass2Motif are plotted below. Features (fragments and losses) explained by this Mass2Motif will be coloured red, while parent ion is coloured in blue. Click Next and Previous to cycle through the fragmentation spectra.

Result goes here: