Mass2Motif: motif_278

Return to experiment PhotorhabdusXenorhabdus_LDA_300Mass2Motifs_minMS2Int_25

Mass2Motif Annotation

The following are the full annotation and the short annotation (used for network visualisation) assigned to this Mass2Motif.

Annotation: Fatty acid C10:0 3-OH related Mass2Motif [fragment 154]

Short Annotation: Fatty acid C10:0 3-OH related Mass2Motif [fragment 154]

Mass2Motif Details

The following table shows the fragment and loss features that are explained by this Mass2Motifs and their corresponding probabilities. After thresholding to save the model, the total probability left in this motif is 0.7613704607710916. The column MAGMa Substructure Annotation shows substructures and the counts of MAGMa annotations for documents linked above threshold to this motif in this experiment. Hovering over each MAGMa substructure shows a plot of the substructure.

Feature Probability MAGMA Substructure Annotation
fragment_154.0875 0.242
fragment_171.1125 0.033
fragment_122.0575 0.031
fragment_129.0875 0.021
fragment_269.1875 0.018
fragment_573.9225 0.016
fragment_475.3375 0.014
fragment_157.0625 0.013
fragment_475.6725 0.013
fragment_574.9275 0.012
fragment_574.4225 0.011
fragment_155.0875 0.011
fragment_471.3375 0.009
fragment_269.1825 0.009
fragment_283.2025 0.007
fragment_476.0075 0.006
fragment_471.6725 0.006
fragment_575.4275 0.006
fragment_174.0925 0.005
fragment_580.9275 0.005
fragment_257.1975 0.005
fragment_151.0875 0.005
loss_143.5575 0.005
fragment_195.1125 0.005
fragment_255.2075 0.005
fragment_475.3325 0.005
fragment_432.7575 0.005
loss_110.6875 0.005
fragment_567.9225 0.004
loss_147.6425 0.004
fragment_358.1625 0.004
fragment_476.3475 0.004
fragment_435.8825 0.004
fragment_374.9625 0.004
loss_109.0525 0.003
loss_191.1275 0.003
fragment_439.6525 0.003
fragment_536.8675 0.003
fragment_472.0075 0.003
fragment_374.2925 0.003
fragment_581.4325 0.003
fragment_575.4325 0.003
fragment_270.1875 0.003
loss_80.5425 0.003
fragment_440.3075 0.003
fragment_455.3025 0.003
fragment_568.4225 0.003
fragment_457.2725 0.003
fragment_112.1075 0.003
loss_134.5475 0.003
loss_153.5675 0.002
loss_65.3625 0.002
fragment_441.3025 0.002
fragment_375.2975 0.002
fragment_436.3375 0.002
loss_133.5725 0.002
fragment_439.9825 0.002
fragment_370.2925 0.002
loss_158.5875 0.002
fragment_454.9375 0.002
fragment_574.9225 0.002
loss_127.5775 0.002
loss_111.5825 0.002
fragment_152.0525 0.002
fragment_433.2575 0.002
fragment_456.3225 0.002
fragment_433.7725 0.002
loss_161.6775 0.002
fragment_144.1225 0.002
fragment_458.3125 0.002
loss_156.5875 0.002
fragment_476.3425 0.002
loss_81.6925 0.002
loss_135.0825 0.002
fragment_472.3375 0.002
fragment_379.9675 0.002
fragment_463.3225 0.002
fragment_537.3675 0.002
loss_196.9425 0.002
fragment_324.2875 0.002
fragment_472.7225 0.002
fragment_473.0025 0.002
fragment_476.0125 0.002
fragment_385.2925 0.002
fragment_491.3225 0.002
loss_64.7175 0.002
fragment_294.8975 0.002
loss_196.6975 0.002
fragment_469.3325 0.002
loss_172.5975 0.002
fragment_459.3275 0.002
loss_59.5175 0.002
fragment_454.6675 0.002
loss_165.5925 0.002
fragment_514.3125 0.002
fragment_157.0825 0.002
fragment_459.9725 0.002
fragment_575.9325 0.002
loss_175.5775 0.002
fragment_453.3325 0.002
fragment_435.8925 0.001
fragment_477.0025 0.001
fragment_454.0125 0.001
fragment_227.1725 0.001
fragment_460.3275 0.001
fragment_473.3325 0.001
fragment_457.9825 0.001
fragment_594.9475 0.001
fragment_452.9375 0.001
fragment_456.6725 0.001
loss_172.6025 0.001
fragment_304.1525 0.001
fragment_454.3075 0.001
loss_182.6825 0.001
fragment_160.1125 0.001
fragment_440.2975 0.001
fragment_458.9875 0.001
fragment_440.6575 0.001
fragment_452.3175 0.001
fragment_165.0675 0.001
fragment_148.0725 0.001
fragment_379.6325 0.001
fragment_560.9325 0.001
fragment_471.7125 0.001
fragment_377.2325 0.001
loss_148.6275 0.001
fragment_115.0125 0.001
fragment_413.7925 0.001
loss_141.5975 0.001
fragment_444.3225 0.001
fragment_455.9775 0.001
loss_78.0475 0.001
fragment_435.6525 0.001
loss_102.4175 0.001
fragment_456.9875 0.001
fragment_440.6725 0.001
loss_168.5875 0.001
fragment_383.2675 0.001
fragment_360.2425 0.001
fragment_477.0075 0.001
fragment_320.6875 0.001
fragment_444.6625 0.001
fragment_187.1175 0.001
fragment_514.8175 0.001
fragment_470.6625 0.001
fragment_444.3125 0.001
fragment_434.2725 0.001
fragment_440.3125 0.001
loss_127.5625 0.001
fragment_469.6725 0.001
fragment_570.8575 0.001
fragment_378.9625 0.001
fragment_478.8275 0.001
loss_179.9175 0.001
fragment_575.9275 0.001
loss_52.5075 0.001

Counts of Mass2Motif Features

Two bar plots will appear below this message. The first shows the proportion of the total intensity of these features explained by this Mass2Motif. Red bars show the total intensity (across the whole dataset), blue bars show the proportion explained by the selected Mass2Motif. The second shows the number of times each feature in this Mass2Motif appears in the documents associated with this Mass2Motif.

Fragmentation Spectra Explained by Mass2Motif

The following table lists all fragmentation spectra that are explained by this Mass2Motif at the threshold specified in the experiment option.

Fragmentation spectraPrecursor MassParent massAnnotationProbabilityOverlap Score
document_4019 538.4200 538.4200 None 1.000 0.336
document_3802 510.3890 510.3890 None 0.992 0.339
document_3920 524.4050 524.4050 None 0.988 0.337
document_3560 475.3380 475.3380 None 0.980 0.365
document_4113 550.4190 550.4190 None 0.979 0.346
document_3269 444.3220 444.3220 None 0.965 0.354
document_3531 471.3380 471.3380 None 0.965 0.352
document_3220 439.6510 439.6510 None 0.961 0.408
document_3170 435.6510 435.6510 None 0.961 0.389
document_3228 440.3220 440.3220 None 0.955 0.386
document_3561 475.3390 475.3390 None 0.920 0.352
document_2243 354.0060 354.0060 None 0.915 0.330
document_3559 475.3380 475.3380 None 0.912 0.472
document_2574 381.2140 381.2140 None 0.865 0.293
document_3149 432.7570 432.7570 None 0.849 0.008
document_2304 358.1610 358.1610 None 0.828 0.344
document_3395 456.6510 456.6510 None 0.818 0.364
document_700 255.2060 255.2060 None 0.767 0.252
document_1565 305.7980 305.7980 None 0.745 0.028
document_4253 564.4350 564.4350 None 0.739 0.301
document_3499 467.8380 467.8380 None 0.707 0.363
document_829 263.6360 263.6360 None 0.613 0.047
document_2321 359.6120 359.6120 None 0.609 0.328
document_3566 476.3330 476.3330 None 0.603 0.365
document_4589 611.9280 611.9280 None 0.538 0.323
document_4550 604.9210 604.9210 None 0.465 0.313
document_2294 357.2600 357.2600 None 0.458 0.351
document_4097 548.3790 548.3790 None 0.448 0.304
document_4501 597.9130 597.9130 None 0.396 0.310
document_3915 524.3820 524.3820 None 0.380 0.251
document_4723 628.9210 628.9210 None 0.360 0.336
document_3540 472.3320 472.3320 None 0.352 0.390
document_4949 661.4630 661.4630 None 0.350 0.313
document_3602 480.3440 480.3440 None 0.326 0.340
document_4370 579.3880 579.3880 None 0.325 0.327
document_4613 614.9040 614.9040 None 0.319 0.304
document_3534 471.6720 471.6720 None 0.309 0.316
document_3530 471.3380 471.3380 None 0.262 0.360
document_3564 476.0100 476.0100 None 0.241 0.326
document_3215 439.3270 439.3270 None 0.208 0.291
document_2575 381.2140 381.2140 None 0.199 0.293
document_3562 475.6720 475.6720 None 0.194 0.301
document_4186 555.8840 555.8840 None 0.184 0.275
document_4268 566.8040 566.8040 None 0.156 0.328
document_3779 506.3570 506.3570 None 0.153 0.316
document_4237 562.3950 562.3950 None 0.153 0.274
document_2255 354.7770 354.7770 None 0.147 0.330
document_4182 555.3860 555.3860 None 0.133 0.322
document_2433 369.2860 369.2860 None 0.127 0.286
document_2059 341.7960 341.7960 None 0.125 0.242
document_2949 413.6350 413.6350 None 0.125 0.281
document_2779 397.6910 397.6910 None 0.125 0.299
document_3179 436.8190 436.8190 None 0.111 0.263
document_4998 668.9130 668.9130 None 0.096 0.252
document_3958 530.2600 530.2600 None 0.091 0.341
document_4543 603.9130 603.9130 None 0.088 0.315
document_3650 486.3890 486.3890 None 0.080 0.284
document_4149 553.2540 553.2540 None 0.080 0.242
document_2528 377.7930 377.7930 None 0.079 0.285
document_3596 480.0090 480.0090 None 0.078 0.303
document_2242 353.7550 353.7550 None 0.074 0.279
document_5197 693.3330 693.3330 None 0.071 0.279
document_5595 792.4220 792.4220 None 0.067 0.263
document_2543 378.9460 378.9460 None 0.059 0.285
document_3753 503.2860 503.2860 None 0.058 0.275
document_2786 398.2900 398.2900 None 0.053 0.249

Fragmentation Spectra Plot

The fragmentation spectra of molecules explained by this Mass2Motif are plotted below. Features (fragments and losses) explained by this Mass2Motif will be coloured red, while parent ion is coloured in blue. Click Next and Previous to cycle through the fragmentation spectra.

Result goes here: